View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7782_low_6 (Length: 539)
Name: NF7782_low_6
Description: NF7782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7782_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 440; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 56 - 520
Target Start/End: Original strand, 39996 - 40456
Alignment:
| Q |
56 |
agcagagacgcagcaaacgatgaagaagaaacgttccggaaaataagggagacgatacatgagaagcttagccatgcccgtcaactgctaaactctgcat |
155 |
Q |
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| T |
39996 |
agcagagacgcatcacacgatgaagaagaaacgttccggaaaataagggagacgatacatgagaagcttagccatgcccgtcaactgctaaactctgcat |
40095 |
T |
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| Q |
156 |
cttctgctcgaaaggatgccatcaggagtagaagaaaggcctttcagaatgctaatcttgcttctcttaaatacatggaacttgagaaccaattagaaca |
255 |
Q |
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| T |
40096 |
cttctgctcgaaaggatgccatcaggagtagaagaaaggcctttcagaatgctaatcttgcttctcttaaatacatggaacttgagaaccaattagaaca |
40195 |
T |
|
| Q |
256 |
agcttgtgaagctgaagattttgaaaccgctgaaatggttagccaacacctttctgcctctgagaaggacaaacaaatctgtaccgaatcattgaggcaa |
355 |
Q |
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| T |
40196 |
agcttgtgaagctgaagattttgaaaccgctgaaatggttagccaacacctttctgcctctgagaaggacaaacaaatctgtaccgaatcattgaggcaa |
40295 |
T |
|
| Q |
356 |
gctgatgcctttatcgatgctttagatttgaaattgcagcatgccctcgactctcacatagctgctgaggaagaatctgcaacattactccaccattatg |
455 |
Q |
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| T |
40296 |
gctgatgcctttatcgatgctttagatttgaaattgcagcatgccctcgactctcacatagctgctgaggaagaatctgcaacattactccaccattatg |
40395 |
T |
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| Q |
456 |
caacggtcagtatattctattcttttaagacatctatgtatgactgactactctaggttcatctc |
520 |
Q |
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| T |
40396 |
caacggtcagtatattctattcttttaagacatctatgta----tgactactctaggttcatctc |
40456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 40436 - 40381
Alignment:
| Q |
1 |
atacatagatgtcttaaaagaattgaatatactgaccgttgcataatagtggagta |
56 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
40436 |
atacatagatgtcttaaaagaatagaatatactgaccgttgcataatggtggagta |
40381 |
T |
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