View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7782_low_7 (Length: 521)
Name: NF7782_low_7
Description: NF7782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7782_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 8 - 504
Target Start/End: Original strand, 31947890 - 31948386
Alignment:
| Q |
8 |
ttggtggtccacaatccctaaacacaaaatcttagttaaggacgaagtggtttgaataagacacgggcggtccaccgagtcattttaatttgtattaaat |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31947890 |
ttggtggtccacaatccctaaacacaaaatcttggttaaggacgaagtggtttgaataagacacgggcggtccacaaagtcattttaatttgtattaaat |
31947989 |
T |
|
| Q |
108 |
ttgtttgctaactttacctataacacatatcaatcacagaacaaggattctattcgtttagtatggggcaaaaccttttcaagattccttaggacaaaga |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31947990 |
ttgtttgctaactttacctataacacatatcaatcacagaacaaggattctattcgtttagtatggggcaaaaccttttcaagattccttaggacaaaga |
31948089 |
T |
|
| Q |
208 |
aagcaaaaccaatcaatcaaaatacaatgtcctatttaagggtagtttcgtcaaaccaatcaccactaccctctatatatcaacaaacattcacttaaga |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31948090 |
aagcaaaaccaatcaatcaaaatacaatgtcctatttaagggtagtttcgtcaaaccaatcaccactaccctctatatatcaacaaacattcacttaaga |
31948189 |
T |
|
| Q |
308 |
aaataaacccacaaaattttcataattccctcttcaaccttgtatctaacattcaaaaacacaaacaacacattcaagcatgtttgctaagaaagttact |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31948190 |
aaataaacccacaaaattttcataattccctcttcaaccttgtatctaacattcaaaaacacaaacaacacattcaagcatgtttgctaagaaagttact |
31948289 |
T |
|
| Q |
408 |
aacgttaacccctttgcaaagaaacgttcccaacatggcgttgtttcttcaacaccaaacgtaaacacaaagaagctatggaggcttccacatgtct |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31948290 |
aacgttaacccctttgcaaagaaacgttcccaacatggcgttgtttcttcaacaccaaacgtaaacacaaagaagctatggaggcttccacatgtct |
31948386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University