View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7782_low_8 (Length: 503)
Name: NF7782_low_8
Description: NF7782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7782_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 7 - 488
Target Start/End: Original strand, 53040814 - 53041295
Alignment:
| Q |
7 |
gtagcatagaaaacataaatggctgggcttacaattctatcttttactatcaatttttgtatgctgaaggatcaattaataatgttcaccctctgtatca |
106 |
Q |
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| T |
53040814 |
gtagcagagaaaacataaatggctgggcttacaattctatcttttattatcaatttttgtatgctgaaggatcaattaataatgttcaccctctgtatca |
53040913 |
T |
|
| Q |
107 |
tcctataaattgatttttattctttacaaattatgtttgctcattagccaaattttcctgcatggaaaaagataattgaagcaaatatcattgacggcta |
206 |
Q |
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| T |
53040914 |
tcctataaattgatttttattctttacaaattatgtttgctcattagccaaattttcctgcatggaaaaagataattgaagcaaatatcattgacgacta |
53041013 |
T |
|
| Q |
207 |
tagactattcaaagcttagttttcatgattgagattatatgaccggtggcttcctttcagggcaattctttgctagactcaaggtagatcgtgaaagacc |
306 |
Q |
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| T |
53041014 |
tagactattcaaagcttagttttcatgattgagattatatgactggtggcttcctttcagggcaattctttgctagactcaagctagatcgtgaaagacc |
53041113 |
T |
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| Q |
307 |
aaacaatagaagaacaatatgggcatttctgtgagagatttggacccagctctcaagggagccggacaaaaagagtatcctgtacaagttgaaaatagtg |
406 |
Q |
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| T |
53041114 |
aaacaatagaagaataatatgggcatttctgtgagagatttggacccagctctcaagggagccggacaaaaagagtatcctgtacaagttgaaaatagtg |
53041213 |
T |
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| Q |
407 |
tattgcattgtttacgatttattatattttcattctcatattaattcattcaagcttgatgcttcatttagttgtgaatgtt |
488 |
Q |
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| T |
53041214 |
tattgcattgtttacgatttattatattttcattctcatattaattcattcaagcttgatgcttcatttagttgtgaatgtt |
53041295 |
T |
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