View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7783_high_12 (Length: 276)

Name: NF7783_high_12
Description: NF7783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7783_high_12
NF7783_high_12
[»] chr2 (17 HSPs)
chr2 (16-254)||(44896278-44896516)
chr2 (89-215)||(39450473-39450599)
chr2 (87-241)||(39488136-39488290)
chr2 (95-245)||(39467126-39467276)
chr2 (89-215)||(39199454-39199580)
chr2 (97-227)||(39398973-39399103)
chr2 (87-164)||(39458181-39458258)
chr2 (89-183)||(27154987-27155081)
chr2 (89-215)||(39382185-39382311)
chr2 (115-220)||(39214925-39215030)
chr2 (91-187)||(39151874-39151970)
chr2 (115-175)||(39422501-39422561)
chr2 (87-187)||(39474277-39474377)
chr2 (119-183)||(39495547-39495611)
chr2 (87-164)||(39123494-39123571)
chr2 (119-176)||(39129487-39129544)
chr2 (87-164)||(39427705-39427782)
[»] chr5 (1 HSPs)
chr5 (133-255)||(17058859-17058981)
[»] chr6 (1 HSPs)
chr6 (119-224)||(16112428-16112533)


Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 254
Target Start/End: Complemental strand, 44896516 - 44896278
Alignment:
Q  16 acgaagataaagatgatactgccgataaattattttcttcactggacaaagaaatcgatttgatnnnnnnntcatttgaggaatgcaaaacgaagaagca 115  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||       |||||||||||||||||||||||||||||    
T  44896516 acgaagataaagatgatactgccgataaattattttcctcactggacaaagaaattgatttgataaaaaaatcatttgaggaatgcaaaacgaagaagca 44896417  T
Q  116 agtagaagaggagatactgcagtccatcaagagagatatcgaggagtgcgacaaagagcttcgaaataagaagacgcaagtaagttgtgttagaaaaatt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44896416 agtagaagaggagatactgcagtccatcaagagagatatcgaggagtgcgacaaagagcttcgaaataagaagacgcaagtaagttgtgttagaaaaatt 44896317  T
Q  216 aacgaaattcaccacagaatgcagggaaaatataaagaa 254  Q
    |||||||||||||||||||||||||||||||||||||||    
T  44896316 aacgaaattcaccacagaatgcagggaaaatataaagaa 44896278  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 89 - 215
Target Start/End: Original strand, 39450473 - 39450599
Alignment:
Q  89 atttgaggaatgcaaaacgaagaagcaagtagaagaggagatactgcagtccatcaagagagatatcgaggagtgcgacaaagagcttcgaaataagaag 188  Q
    |||||||||||| |||| |||| || ||||||||||  ||| | ||||||||||||||| |||||| ||||| |||  ||||||||||| |||||||||     
T  39450473 atttgaggaatgtaaaaggaagcagaaagtagaagaaaagagattgcagtccatcaagacagatattgaggactgctgcaaagagcttcaaaataagaaa 39450572  T
Q  189 acgcaagtaagttgtgttagaaaaatt 215  Q
    | |||||| ||||||||||||| ||||    
T  39450573 aagcaagttagttgtgttagaagaatt 39450599  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 87 - 241
Target Start/End: Complemental strand, 39488290 - 39488136
Alignment:
Q  87 tcatttgaggaatgcaaaacgaagaagcaagtagaagaggagatactgcagtccatcaagagagatatcgaggagtgcgacaaagagcttcgaaataaga 186  Q
    ||||||||||||||||||| ||| | |||||||||||||| || ||||||||| || ||||||||| | |||||||||   |||||||||  ||||||||    
T  39488290 tcatttgaggaatgcaaaaggaaaaggcaagtagaagaggggagactgcagtctataaagagagatgttgaggagtgctctaaagagcttgaaaataaga 39488191  T
Q  187 agacgcaagtaagttgtgttagaaaaattaacgaaattcaccacagaatgcaggg 241  Q
    | | | || | ||||||||| ||| |||||||||| ||||| | | |||||||||    
T  39488190 aaaaggaaattagttgtgttggaagaattaacgaagttcactagaaaatgcaggg 39488136  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 95 - 245
Target Start/End: Original strand, 39467126 - 39467276
Alignment:
Q  95 ggaatgcaaaacgaagaagcaagtagaagaggagatactgcagtccatcaagagagatatcgaggagtgcgacaaagagcttcgaaataagaagacgcaa 194  Q
    ||||||||||| |||||  || || ||||||  || |||||||| ||| |||||||| ||||| |||||    |||||||||  ||||||||||| ||||    
T  39467126 ggaatgcaaaaggaagagacatgtggaagagatgagactgcagtgcatgaagagagagatcgaagagtgttggaaagagcttgtaaataagaagaagcaa 39467225  T
Q  195 gtaagttgtgttagaaaaattaacgaaattcaccacagaatgcagggaaaa 245  Q
    ||  ||||||| |||| |||||||||||||||| ||| ||||| |||||||    
T  39467226 gttggttgtgtgagaagaattaacgaaattcacgacaaaatgctgggaaaa 39467276  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 215
Target Start/End: Complemental strand, 39199580 - 39199454
Alignment:
Q  89 atttgaggaatgcaaaacgaagaagcaagtagaagaggagatactgcagtccatcaagagagatatcgaggagtgcgacaaagagcttcgaaataagaag 188  Q
    |||| |||||||||||| |||| || |||| |||||| | | | |||||||||| ||||||||||  || ||||||  ||||||||||| ||||||||||    
T  39199580 atttaaggaatgcaaaaggaagcagaaagttgaagagaaaagattgcagtccataaagagagatactgaagagtgctgcaaagagcttcaaaataagaag 39199481  T
Q  189 acgcaagtaagttgtgttagaaaaatt 215  Q
    |  ||||| |||  |||||||| ||||    
T  39199480 aaccaagttagtgttgttagaagaatt 39199454  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 227
Target Start/End: Complemental strand, 39399103 - 39398973
Alignment:
Q  97 aatgcaaaacgaagaagcaagtagaagaggagatactgcagtccatcaagagagatatcgaggagtgcgacaaagagcttcgaaataagaagacgcaagt 196  Q
    ||||||||| ||||| | ||||||||||| ||| | |||||||||| ||||||||||| || || |||   ||||| ||| |||| ||||||  ||||||    
T  39399103 aatgcaaaaggaagaggaaagtagaagagaagagattgcagtccataaagagagatattgaagactgctggaaagaacttggaaaaaagaagcagcaagt 39399004  T
Q  197 aagttgtgttagaaaaattaacgaaattcac 227  Q
     | ||||||||||| | |||| |||||||||    
T  39399003 tatttgtgttagaagacttaatgaaattcac 39398973  T

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Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 164
Target Start/End: Original strand, 39458181 - 39458258
Alignment:
Q  87 tcatttgaggaatgcaaaacgaagaagcaagtagaagaggagatactgcagtccatcaagagagatatcgaggagtgc 164  Q
    ||||||||||| ||||||| || ||  |||||||||||| ||| | |||||||||| ||||||||||| |||||||||    
T  39458181 tcatttgaggattgcaaaaggacgagacaagtagaagagaagagattgcagtccataaagagagatattgaggagtgc 39458258  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 183
Target Start/End: Complemental strand, 27155081 - 27154987
Alignment:
Q  89 atttgaggaatgcaaaacgaagaagcaagtagaagaggagatactgcagtccatcaagagagatatcgaggagtgcgacaaagagcttcgaaata 183  Q
    |||||| |||| ||||| ||| |  |||| ||||||||| | | |||||||||| ||||||||||| |||||||||  |||||||||| ||||||    
T  27155081 atttgaagaattcaaaaagaaaagacaagaagaagaggaaagattgcagtccataaagagagatattgaggagtgctccaaagagcttggaaata 27154987  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 215
Target Start/End: Complemental strand, 39382311 - 39382185
Alignment:
Q  89 atttgaggaatgcaaaacgaagaagcaagtagaagaggagatactgcagtccatcaagagagatatcgaggagtgcgacaaagagcttcgaaataagaag 188  Q
    ||||| ||||||||||  |||| || || |||||||| ||| | | |||||||| ||||||||||  || ||||||  ||||||||||| ||||||||||    
T  39382311 atttgtggaatgcaaatggaagcagaaactagaagagaagagattacagtccataaagagagatactgaagagtgctgcaaagagcttcaaaataagaag 39382212  T
Q  189 acgcaagtaagttgtgttagaaaaatt 215  Q
    |  ||||| |||  |||||||| ||||    
T  39382211 aaccaagttagtgttgttagaagaatt 39382185  T

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Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 220
Target Start/End: Original strand, 39214925 - 39215030
Alignment:
Q  115 aagtagaagaggagatactgcagtccatcaagagagatatcgaggagtgcgacaaagagcttcgaaataagaagacgcaagtaagttgtgttagaaaaat 214  Q
    ||||||| ||| ||| | |||||||||| |||||| || | |||||||||   |||||||||  |||||||||||| || || ||||||||||||| |||    
T  39214925 aagtagaggagaagagattgcagtccataaagagatatgttgaggagtgctgtaaagagcttgaaaataagaagacacaggtcagttgtgttagaagaat 39215024  T
Q  215 taacga 220  Q
    | ||||    
T  39215025 tgacga 39215030  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 187
Target Start/End: Original strand, 39151874 - 39151970
Alignment:
Q  91 ttgaggaatgcaaaacgaagaagcaagtagaagaggagatactgcagtccatcaagagagatatcgaggagtgcgacaaagagcttcgaaataagaa 187  Q
    |||| |||||||||| ||| | ||||||||||||| ||| ||||||||| || |||||| |||| |||||  ||  ||||||||||  |||||||||    
T  39151874 ttgatgaatgcaaaaggaaaaggcaagtagaagagaagagactgcagtcaataaagagaaatattgaggaacgctccaaagagcttgaaaataagaa 39151970  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 175
Target Start/End: Complemental strand, 39422561 - 39422501
Alignment:
Q  115 aagtagaagaggagatactgcagtccatcaagagagatatcgaggagtgcgacaaagagct 175  Q
    ||||||||||| ||||| |||||||||| ||||||||||| ||| |||||  |||||||||    
T  39422561 aagtagaagagaagatattgcagtccataaagagagatattgagaagtgctgcaaagagct 39422501  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 39474377 - 39474277
Alignment:
Q  87 tcatttgaggaatgcaaaacgaagaagcaagtagaagaggagatactgcagtccatcaagagagatatcgaggagtgcgacaaagagcttcgaaataaga 186  Q
    ||||||||||| ||| ||| || || |||| ||||| |||||| | |||| ||||| ||||||||||| |||||||||  | ||||||||  ||||||||    
T  39474377 tcatttgaggattgccaaaggacgacgcaaatagaaaaggagagattgcattccataaagagagatattgaggagtgctccgaagagcttgaaaataaga 39474278  T
Q  187 a 187  Q
    |    
T  39474277 a 39474277  T

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Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 39495611 - 39495547
Alignment:
Q  119 agaagaggagatactgcagtccatcaagagagatatcgaggagtgcgacaaagagcttcgaaata 183  Q
    ||||||||||| | |||||||||| ||||||||||| |||||| ||  |||||||||| ||||||    
T  39495611 agaagaggagagattgcagtccataaagagagatattgaggagcgctccaaagagcttggaaata 39495547  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 164
Target Start/End: Original strand, 39123494 - 39123571
Alignment:
Q  87 tcatttgaggaatgcaaaacgaagaagcaagtagaagaggagatactgcagtccatcaagagagatatcgaggagtgc 164  Q
    |||| |||||||||||||| ||||| ||||||| ||||||| | | |||| |||||  |||||||||| |||| ||||    
T  39123494 tcatatgaggaatgcaaaaagaagaggcaagtataagaggatagattgcactccatacagagagatattgaggggtgc 39123571  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 39129487 - 39129544
Alignment:
Q  119 agaagaggagatactgcagtccatcaagagagatatcgaggagtgcgacaaagagctt 176  Q
    ||||||| ||| | |||||||||| ||||||||||| |||||||||  ||||||||||    
T  39129487 agaagagaagagattgcagtccataaagagagatattgaggagtgctccaaagagctt 39129544  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 164
Target Start/End: Complemental strand, 39427782 - 39427705
Alignment:
Q  87 tcatttgaggaatgcaaaacgaagaagcaagtagaagaggagatactgcagtccatcaagagagatatcgaggagtgc 164  Q
    |||||||||||||| |||| |||||| |||  ||||||||||| | ||   ||||| |||||||| ||||||||||||    
T  39427782 tcatttgaggaatgtaaaaagaagaaacaacgagaagaggagagattgatttccataaagagagagatcgaggagtgc 39427705  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 255
Target Start/End: Original strand, 17058859 - 17058981
Alignment:
Q  133 tgcagtccatcaagagagatatcgaggagtgcgacaaagagcttcgaaataagaagacgcaagtaagttgtgttagaaaaattaacgaaattcaccacag 232  Q
    ||||||| || ||||||||||| ||  ||||| || | ||||||  |||||| ||||| ||||| ||||||||| | | |||||||||||||||||| |     
T  17058859 tgcagtctataaagagagatattgataagtgctactatgagcttaaaaataaaaagacacaagttagttgtgttcgtagaattaacgaaattcaccagaa 17058958  T
Q  233 aatgcagggaaaatataaagaaa 255  Q
    ||||| || ||||  ||||||||    
T  17058959 aatgctggaaaaagttaaagaaa 17058981  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 224
Target Start/End: Original strand, 16112428 - 16112533
Alignment:
Q  119 agaagaggagatactgcagtccatcaagagagatatcgaggagtgcgacaaagagcttcgaaataagaagacgcaagtaagttgtgttagaaaaattaac 218  Q
    ||||||| ||| | |||||||||| ||||||||||| || || ||    |||||||||||||||||||||  || ||| | ||||||||||| | ||||     
T  16112428 agaagagaagaaattgcagtccataaagagagatattgaagaatgttgtaaagagcttcgaaataagaagcagcgagttatttgtgttagaagagttaat 16112527  T
Q  219 gaaatt 224  Q
    ||||||    
T  16112528 gaaatt 16112533  T

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