View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7783_high_14 (Length: 273)
Name: NF7783_high_14
Description: NF7783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7783_high_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 15 - 174
Target Start/End: Original strand, 12559851 - 12560010
Alignment:
| Q |
15 |
acttgaagaacaacttcttattcttgaacttcatagtcgttggggaaaccggtaagcaattgatacatgcataaaaacatacacatcagagtttatatta |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12559851 |
acttgaagaacaacttcttattcttgaacttcatagtcgttggggaaaccggtaagcaattgatacatgcataaaaacatacacatcagagtttatatta |
12559950 |
T |
|
| Q |
115 |
ttttgttacaattagaatagttaaattatggagtaaaaattattattacagaaaaagaag |
174 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12559951 |
ttttgttataattagaatagttaaattatggagtaaaaattattattacagaaaaagaag |
12560010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 12560041 - 12560104
Alignment:
| Q |
183 |
tcatctttccaaattcgtcgttaaatattagagatgtgaaattagaaattagaaattattttca |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
12560041 |
tcatctttccaaattcgtcgttaaatattagagacgtgaaattagaaattagaaattagtttca |
12560104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University