View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7783_high_19 (Length: 253)

Name: NF7783_high_19
Description: NF7783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7783_high_19
NF7783_high_19
[»] chr4 (3 HSPs)
chr4 (45-240)||(56171808-56172005)
chr4 (86-200)||(26742492-26742606)
chr4 (87-127)||(31381838-31381879)
[»] chr2 (8 HSPs)
chr2 (114-240)||(17792480-17792605)
chr2 (102-167)||(15261474-15261539)
chr2 (83-201)||(27095680-27095798)
chr2 (84-201)||(44942261-44942378)
chr2 (136-201)||(20607340-20607405)
chr2 (90-175)||(27665601-27665686)
chr2 (86-129)||(40039360-40039403)
chr2 (91-190)||(25067835-25067934)
[»] chr7 (10 HSPs)
chr7 (86-200)||(39990203-39990316)
chr7 (92-190)||(4028168-4028264)
chr7 (93-201)||(36579340-36579448)
chr7 (115-179)||(43256599-43256663)
chr7 (83-201)||(28664940-28665058)
chr7 (90-203)||(5237936-5238050)
chr7 (90-200)||(45457585-45457695)
chr7 (90-201)||(9785299-9785410)
chr7 (101-161)||(23303503-23303563)
chr7 (83-131)||(24988452-24988500)
[»] chr1 (6 HSPs)
chr1 (101-190)||(31609735-31609823)
chr1 (90-190)||(18889058-18889158)
chr1 (136-191)||(31427182-31427237)
chr1 (90-187)||(38783050-38783147)
chr1 (91-201)||(42490876-42490986)
chr1 (83-131)||(17347574-17347622)
[»] chr3 (11 HSPs)
chr3 (100-201)||(5327512-5327613)
chr3 (101-201)||(4219175-4219273)
chr3 (86-201)||(31270304-31270419)
chr3 (84-190)||(13702019-13702125)
chr3 (84-201)||(34960894-34961011)
chr3 (87-128)||(49552389-49552431)
chr3 (96-201)||(49628123-49628228)
chr3 (83-131)||(32080859-32080908)
chr3 (83-190)||(11819058-11819165)
chr3 (90-125)||(29503332-29503368)
chr3 (90-125)||(51202418-51202454)
[»] chr6 (4 HSPs)
chr6 (92-167)||(15175797-15175872)
chr6 (92-167)||(15470296-15470371)
chr6 (90-160)||(7870151-7870221)
chr6 (90-201)||(21507836-21507947)
[»] chr8 (6 HSPs)
chr8 (94-174)||(10952323-10952403)
chr8 (94-174)||(10960328-10960408)
chr8 (102-189)||(19384338-19384425)
chr8 (87-128)||(17949123-17949165)
chr8 (86-201)||(2968507-2968625)
chr8 (90-201)||(37612635-37612746)
[»] chr5 (6 HSPs)
chr5 (142-201)||(374317-374376)
chr5 (90-128)||(10649328-10649367)
chr5 (83-201)||(17331303-17331421)
chr5 (143-191)||(26612049-26612097)
chr5 (117-201)||(39179856-39179939)
chr5 (90-201)||(43493854-43493965)
[»] scaffold0238 (1 HSPs)
scaffold0238 (93-167)||(15739-15813)


Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 45 - 240
Target Start/End: Original strand, 56171808 - 56172005
Alignment:
Q  45 caaatcctaactgttgcaacttttcttttccttgatccgtca--gatgggtgattttgggtcaattttgacctgaaatcacccctccgaagtatttttat 142  Q
    |||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  56171808 caaatcctaactgttgcaacttttcttttccttgatccatcaaagatgggtgattttgggtcaattttgacctgaaatcatccctccgaagtatttttat 56171907  T
Q  143 ttctcttttagttaaataagcgattctcacatattttaagttttcttttgcttgttttttgtgttctcgtcatctcacatgactttgtttattctgat 240  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  56171908 ttctcttttagttaaataagtgattctcacatattttaagttttcttttgcttgttttttgtgttctcgtcatctcacatgactttgtttattttgat 56172005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 200
Target Start/End: Complemental strand, 26742606 - 26742492
Alignment:
Q  86 agatgggtgattttgggtcaattttga-cctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaagtt 184  Q
    ||||||||||||| || |||||||||| ||  ||||||||| |||||| | ||||| ||||| | ||| || |||||| |||| |||||||||||  |||    
T  26742606 agatgggtgatttaggatcaattttgacccaaaaatcacccatccgaattgtttttctttctatcttaattgaataagtgatt-tcacatattttctgtt 26742508  T
Q  185 ttcttttgcttgtttt 200  Q
    |||||| | |||||||    
T  26742507 ttctttcgtttgtttt 26742492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 31381879 - 31381838
Alignment:
Q  87 gatgggtgattttgggtcaatt-ttgacctgaaatcacccct 127  Q
    |||||||| ||||||||||||| |||||||||||||||||||    
T  31381879 gatgggtggttttgggtcaattcttgacctgaaatcacccct 31381838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 114 - 240
Target Start/End: Original strand, 17792480 - 17792605
Alignment:
Q  114 ctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaagttttcttttgcttgttttttgtgttctcgtc 213  Q
    ||||||||||||||||  | | ||||| |||||||| ||||||||||||||||| ||||||||||| |||||||||| | ||| |||||||| | |||||    
T  17792480 ctgaaatcacccctccatattgtttttctttctcttctagttaaataagcgattttcacatattttcagttttctttcgtttg-tttttgtgatttcgtc 17792578  T
Q  214 atctcacatgactttgtttattctgat 240  Q
    ||||  || ||||||||||||| ||||    
T  17792579 atctagcacgactttgtttattttgat 17792605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 167
Target Start/End: Complemental strand, 15261539 - 15261474
Alignment:
Q  102 gtcaattttgacctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgatt 167  Q
    ||||||||||||| |||||||||| |||||| | ||||| |||||||||||| |||||||| ||||    
T  15261539 gtcaattttgacccgaaatcacccttccgaattgtttttctttctcttttagctaaataagtgatt 15261474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 201
Target Start/End: Original strand, 27095680 - 27095798
Alignment:
Q  83 gtcagatgggtgattttgggtcaattttgacct-gaaatcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaa 181  Q
    |||||||||||||||| ||||||||||||||||  |||||||||||||||  | |||||  |||| |  || || |||||| |||| |||||||||||      
T  27095680 gtcagatgggtgatttagggtcaattttgacctaaaaatcacccctccgagttgtttttccttctatcctaattgaataagtgatt-tcacatatttttt 27095778  T
Q  182 gttttcttttgcttgttttt 201  Q
    ||||||||| | ||||||||    
T  27095779 gttttctttcgtttgttttt 27095798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 84 - 201
Target Start/End: Original strand, 44942261 - 44942378
Alignment:
Q  84 tcagatgggtgattttgggtcaattttgacctgaaa-tcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaag 182  Q
    |||||||||||||||  ||||||||||||||  ||| ||||||||||||  | |||||  |||| |  || || |||||| |||| |||||||||||| |    
T  44942261 tcagatgggtgatttatggtcaattttgacccaaaaatcacccctccgagttgttttttcttctatcctaattgaataagtgatt-tcacatattttatg 44942359  T
Q  183 ttttcttttgcttgttttt 201  Q
    |||||||||| ||||||||    
T  44942360 ttttcttttgtttgttttt 44942378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 20607405 - 20607340
Alignment:
Q  136 tttttatttctcttttagttaaataagcgattctcacatattttaagttttcttttgcttgttttt 201  Q
    ||||| ||||| |||||||||| |||| |||| ||||||||||| |||||||||| | ||||||||    
T  20607405 tttttctttcttttttagttaactaagtgattttcacatattttcagttttctttcgtttgttttt 20607340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 175
Target Start/End: Original strand, 27665601 - 27665686
Alignment:
Q  90 gggtgattttgggtcaattttgacctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacata 175  Q
    ||||||||| || | ||||||||||| ||||||||  | |||  | |||||||||||||||||||||||||||  ||| |||||||    
T  27665601 gggtgatttaggataaattttgacctaaaatcaccaattcgacttgtttttatttctcttttagttaaataagttattttcacata 27665686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 40039403 - 40039360
Alignment:
Q  86 agatgggtgattttgggtcaattttgacctgaaatcacccctcc 129  Q
    |||| |||||| | ||||||||||||||||||||||||||||||    
T  40039403 agatcggtgatgtagggtcaattttgacctgaaatcacccctcc 40039360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 190
Target Start/End: Original strand, 25067835 - 25067934
Alignment:
Q  91 ggtgattttgggtcaattttga-cctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaagttttctt 189  Q
    |||||||| ||||||||||||| ||  |||||||||||||||  | |||||  |||| ||||| || |||||| |||| |||||||||||  ||||||||    
T  25067835 ggtgatttagggtcaattttgacccaaaaatcacccctccgatttgtttttccttctattttaattgaataagtgatt-tcacatattttctgttttctt 25067933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 86 - 200
Target Start/End: Complemental strand, 39990316 - 39990203
Alignment:
Q  86 agatgggtgattttgggtcaattttgacctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaagttt 185  Q
    |||||| |||||| |||||||||||||| |||||||||| ||||||| | |||   |||||| |||||||||||| | |||| ||||||||||| |||||    
T  39990316 agatggatgatttagggtcaattttgacatgaaatcacctctccgaattgtttaactttctc-tttagttaaataggtgattttcacatattttcagttt 39990218  T
Q  186 tcttttgcttgtttt 200  Q
    ||||| | |||||||    
T  39990217 tctttcgtttgtttt 39990203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 190
Target Start/End: Original strand, 4028168 - 4028264
Alignment:
Q  92 gtgattttgggtcaattttgacctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcga-ttctcacatattttaagttttcttt 190  Q
    ||||||| |||| ||||||||||  ||||||||||   ||  ||||||| ||||||||||||||||||||| || || ||| ||||||||||||||||||    
T  4028168 gtgatttagggttaattttgacccaaaatcacccc---gacttatttttctttctcttttagttaaataagtgatttttcatatattttaagttttcttt 4028264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 201
Target Start/End: Complemental strand, 36579448 - 36579340
Alignment:
Q  93 tgattttgggtcaattttgacctgaaa-tcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaagttttctttt 191  Q
    |||||| ||||||||||||||| |||| ||||||||||||| | |||||  |||| |  ||||| |||||| ||||| ||||||||||  ||||||||||    
T  36579448 tgatttagggtcaattttgacccgaaaatcacccctccgaattgtttttccttctatcctagttgaataagtgattc-cacatattttttgttttctttt 36579350  T
Q  192 gcttgttttt 201  Q
    | ||||||||    
T  36579349 gtttgttttt 36579340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 43256663 - 43256599
Alignment:
Q  115 tgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatatttt 179  Q
    |||||||||| ||  ||| | ||||||||||||||||||||||||||| |||| |||||||||||    
T  43256663 tgaaatcaccactttgaattgtttttatttctcttttagttaaataagtgattatcacatatttt 43256599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 201
Target Start/End: Complemental strand, 28665058 - 28664940
Alignment:
Q  83 gtcagatgggtgattttgggtcaattttga-cctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaa 181  Q
    |||||||||||||||| ||||||||||||| ||| |||||||||||||||  | |||||  |||| |  || || |||||| |||| |||||||||||      
T  28665058 gtcagatgggtgatttagggtcaattttgaccctaaaatcacccctccgagttgtttttccttctatcctaattgaataagtgatt-tcacatattttct 28664960  T
Q  182 gttttcttttgcttgttttt 201  Q
    ||||||||| | ||||||||    
T  28664959 gttttctttcgtttgttttt 28664940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 90 - 203
Target Start/End: Original strand, 5237936 - 5238050
Alignment:
Q  90 gggtgattttgggtcaattttgacctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcga-ttctcacatattttaagttttct 188  Q
    ||||||||| ||||||| ||||||   ||||||||| ||  || | ||||  ||||||||||||||||||||| || || ||||||||||| | ||||||    
T  5237936 gggtgatttagggtcaaatttgactcaaaatcacccttctaaattgttttgctttctcttttagttaaataagagatttttcacatattttcaattttct 5238035  T
Q  189 tttgcttgttttttg 203  Q
    |||| | ||||||||    
T  5238036 tttgttggttttttg 5238050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 200
Target Start/End: Complemental strand, 45457695 - 45457585
Alignment:
Q  90 gggtgattttgggtcaattttgac-ctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaagttttct 188  Q
    ||||||||| |||||||||||||| |  ||||||| |||||||| | |||||  |||| | ||| || |||||| |||| |||||||||||| |||||||    
T  45457695 gggtgatttagggtcaattttgacgcaaaaatcactcctccgaattgtttttccttctatcttaattgaataagtgatt-tcacatattttatgttttct 45457597  T
Q  189 tttgcttgtttt 200  Q
    || | |||||||    
T  45457596 ttcgtttgtttt 45457585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 201
Target Start/End: Original strand, 9785299 - 9785410
Alignment:
Q  90 gggtgattttgggtcaattttga-cctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaagttttct 188  Q
    ||||||||| ||||||||||||| ||  ||||||||||| |||| | |||||  |||| | ||| || |||||| |||| |||||||||||  |||||||    
T  9785299 gggtgatttagggtcaattttgacccaaaaatcaccccttcgaattgtttttccttctatcttaattgaataagtgatt-tcacatattttttgttttct 9785397  T
Q  189 tttgcttgttttt 201  Q
    |||| || |||||    
T  9785398 tttgtttattttt 9785410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 23303503 - 23303563
Alignment:
Q  101 ggtcaattttgacctgaaatcacccctccgaagtatttttatttctcttttagttaaataa 161  Q
    |||||||||||| ||||||||| |||| | || | ||||| ||||||||| ||||||||||    
T  23303503 ggtcaattttgatctgaaatcagcccttcaaattgtttttctttctctttcagttaaataa 23303563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 131
Target Start/End: Complemental strand, 24988500 - 24988452
Alignment:
Q  83 gtcagatgggtgattttgggtcaattttgacctgaaatcacccctccga 131  Q
    |||||| ||||||||  |||||||||||||||  |||||||||||||||    
T  24988500 gtcagaggggtgattcagggtcaattttgacccaaaatcacccctccga 24988452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 101 - 190
Target Start/End: Original strand, 31609735 - 31609823
Alignment:
Q  101 ggtcaattttgacctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaagttttcttt 190  Q
    |||||||||||||||| |||||||||||| || | |||||||||||||||||||| ||| || |||| |||||| |||| ||||||||||    
T  31609735 ggtcaattttgacctgcaatcacccctccaaattgtttttatttctcttttagtttaatgagtgatt-tcacatttttttagttttcttt 31609823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 190
Target Start/End: Original strand, 18889058 - 18889158
Alignment:
Q  90 gggtgattttgggtcaattttgacctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaagttttctt 189  Q
    ||||||||| | |||||||||| ||  |||||||||||| ||| | ||||||||||||||||||  ||||||  |||| ||||||| ||| | |||||||    
T  18889058 gggtgatttagagtcaattttggccgaaaatcacccctctgaattgtttttatttctcttttagcaaaataaatgattttcacatactttcaattttctt 18889157  T
Q  190 t 190  Q
    |    
T  18889158 t 18889158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 31427237 - 31427182
Alignment:
Q  136 tttttatttctcttttagttaaataagcgattctcacatattttaagttttctttt 191  Q
    |||| |||||||||||||| |||||||  ||| |||||||||||||||||||||||    
T  31427237 ttttaatttctcttttagtaaaataagttattttcacatattttaagttttctttt 31427182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 187
Target Start/End: Original strand, 38783050 - 38783147
Alignment:
Q  90 gggtgattttgggtcaattttgacctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaagttttc 187  Q
    |||||||||  ||| |||||||| |||||||||  | |  ||| | ||||| ||||||||||||||||||||| |||| | ||||||||| |||||||    
T  38783050 gggtgatttaaggttaattttgatctgaaatcattcatttgaattgtttttctttctcttttagttaaataagtgattttaacatattttcagttttc 38783147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 201
Target Start/End: Original strand, 42490876 - 42490986
Alignment:
Q  91 ggtgattttgggtcaattttgacctgaaa-tcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaagttttctt 189  Q
    |||||||| ||||||| |||||||| ||| ||||||||||||| | |||||  |||| | ||| || |||||| |||| |||||||| || |||||||||    
T  42490876 ggtgatttagggtcaagtttgacctaaaaatcacccctccgaattgtttttcgttctatcttaattgaataagtgatt-tcacatatcttcagttttctt 42490974  T
Q  190 ttgcttgttttt 201  Q
    | | ||||||||    
T  42490975 tcgtttgttttt 42490986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 131
Target Start/End: Original strand, 17347574 - 17347622
Alignment:
Q  83 gtcagatgggtgattttgggtcaattttgacctgaaatcacccctccga 131  Q
    ||||||||| |||||| |||||||||||||||  ||||||||| |||||    
T  17347574 gtcagatggatgatttagggtcaattttgaccaaaaatcacccatccga 17347622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 100 - 201
Target Start/End: Complemental strand, 5327613 - 5327512
Alignment:
Q  100 gggtcaattttgacctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaagttttcttttgcttgttt 199  Q
    |||| ||||||||| | ||||||||||| | || | ||||| ||||||||| ||||||||||| |||| ||||| ||||| |||||||||| | ||||||    
T  5327613 gggttaattttgacttaaaatcacccctgcaaattgtttttctttctctttcagttaaataagtgattatcacaaattttcagttttctttcgtttgttt 5327514  T
Q  200 tt 201  Q
    ||    
T  5327513 tt 5327512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 101 - 201
Target Start/End: Original strand, 4219175 - 4219273
Alignment:
Q  101 ggtcaattttgacctgaaatcacccctccgaagtatttttatttc--tcttttagttaaataagcgattctcacatattttaagttttcttttgcttgtt 198  Q
    ||||||||||||||||||||||| | ||||||    || ||||||  || |||||||||||||| |||| ||||||||||| |||||||||| | |||||    
T  4219175 ggtcaattttgacctgaaatcactcatccgaa----ttgtatttccttcctttagttaaataagtgattttcacatattttcagttttctttcgtttgtt 4219270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 86 - 201
Target Start/End: Original strand, 31270304 - 31270419
Alignment:
Q  86 agatgggtgattttgggtcaattttga-cctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaagtt 184  Q
    ||||||||||||| ||||||||||||| ||  ||||||||||| |||| |||||||  |||| |  || || |||||| |||| |||||||||||| |||    
T  31270304 agatgggtgatttagggtcaattttgacccaaaaatcaccccttcgaattatttttccttctatcctaattgaataagtgatt-tcacatattttatgtt 31270402  T
Q  185 ttcttttgcttgttttt 201  Q
    |||||| | ||||||||    
T  31270403 ttctttcgtttgttttt 31270419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 190
Target Start/End: Complemental strand, 13702125 - 13702019
Alignment:
Q  84 tcagatgggtgattttgggtcaattttgacctgaaa-tcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaag 182  Q
    ||||| ||||||||| |||||||||||||||  ||| |||||||| |||| ||||||| ||||| |  || || |||||| |||| |||||||||||  |    
T  13702125 tcagaggggtgatttagggtcaattttgacccaaaagtcaccccttcgaattatttttctttctatcataattgaataagtgatt-tcacatattttctg 13702027  T
Q  183 ttttcttt 190  Q
    ||||||||    
T  13702026 ttttcttt 13702019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 201
Target Start/End: Complemental strand, 34961011 - 34960894
Alignment:
Q  84 tcagatgggtgattttgggtcaattttgacctgaaa-tcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaag 182  Q
    ||||| |||||| || |||||||||||||||  ||| ||||||||| ||| | |||||  |||| || || || |||||| |||| |||||||||||| |    
T  34961011 tcagaggggtgacttagggtcaattttgacccaaaaatcacccctcagaattgttttttcttctattctaattgaataagtgatt-tcacatattttatg 34960913  T
Q  183 ttttcttttgcttgttttt 201  Q
    |||||||| | ||||||||    
T  34960912 ttttctttcgtttgttttt 34960894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 49552431 - 49552389
Alignment:
Q  87 gatgggtgattttgggtcaatt-ttgacctgaaatcacccctc 128  Q
    |||||||| ||||||||||||| ||||||||||||||||||||    
T  49552431 gatgggtggttttgggtcaattcttgacctgaaatcacccctc 49552389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 201
Target Start/End: Complemental strand, 49628228 - 49628123
Alignment:
Q  96 ttttgggtcaattttgacct-gaaatcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaagttttcttttgct 194  Q
    ||||||||||||||||||||  |||||||||||| ||| | |||||  |||| |  ||||| |||||| |||| |||||||||||  ||||||||| | |    
T  49628228 ttttgggtcaattttgacctaaaaatcacccctctgaattgtttttccttctatcctagttgaataagtgatt-tcacatattttttgttttctttcgtt 49628130  T
Q  195 tgttttt 201  Q
    |||||||    
T  49628129 tgttttt 49628123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 131
Target Start/End: Complemental strand, 32080908 - 32080859
Alignment:
Q  83 gtcagatgggtgattttgggtcaattttga-cctgaaatcacccctccga 131  Q
    |||||||||||||||| ||||||||||||| ||  |||||||||||||||    
T  32080908 gtcagatgggtgatttagggtcaattttgacccaaaaatcacccctccga 32080859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 190
Target Start/End: Original strand, 11819058 - 11819165
Alignment:
Q  83 gtcagatgggtgattttgggtcaattttga-cctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaa 181  Q
    |||||| ||||||||| ||||||||||||| ||  |||||||||||||||  | |||||  ||||   ||| || |||||| |||| ||||||||||||     
T  11819058 gtcagaggggtgatttagggtcaattttgacccaaaaatcacccctccgatttgtttttccttctaccttaattgaataagtgatt-tcacatattttat 11819156  T
Q  182 gttttcttt 190  Q
    |||||||||    
T  11819157 gttttcttt 11819165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 29503332 - 29503368
Alignment:
Q  90 gggtgattttgggtcaatt-ttgacctgaaatcaccc 125  Q
    ||||||||||||||||||| |||||||||||||||||    
T  29503332 gggtgattttgggtcaattcttgacctgaaatcaccc 29503368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 51202454 - 51202418
Alignment:
Q  90 gggtgattttgggtcaatt-ttgacctgaaatcaccc 125  Q
    ||||||||||||||||||| |||||||||||||||||    
T  51202454 gggtgattttgggtcaattcttgacctgaaatcaccc 51202418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 92 - 167
Target Start/End: Original strand, 15175797 - 15175872
Alignment:
Q  92 gtgattttgggtcaattttgacctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgatt 167  Q
    |||||||| ||||||||||||||  |||||||||||||||| | ||||| ||||| ||||| ||||||||| ||||    
T  15175797 gtgattttcggtcaattttgacccaaaatcacccctccgaaatgtttttctttctattttacttaaataagtgatt 15175872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 167
Target Start/End: Complemental strand, 15470371 - 15470296
Alignment:
Q  92 gtgattttgggtcaattttgacctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgatt 167  Q
    |||||||| ||||||||||||||  |||||||||||| ||| | ||||| ||||| ||||| ||||||||| ||||    
T  15470371 gtgatttttggtcaattttgacccaaaatcacccctctgaaatgtttttctttctattttacttaaataagtgatt 15470296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 7870151 - 7870221
Alignment:
Q  90 gggtgattttgggtcaattttgacctgaaatcacccctccgaagtatttttatttctcttttagttaaata 160  Q
    ||||||||| ||||||||||| | |||||||||||  || ||| | || || |||||||||||||||||||    
T  7870151 gggtgatttagggtcaatttttatctgaaatcaccaatcggaattgttcttctttctcttttagttaaata 7870221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 201
Target Start/End: Complemental strand, 21507947 - 21507836
Alignment:
Q  90 gggtgattttgggtcaattttgacctgaa-atcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaagttttct 188  Q
    ||||||||| |||||||||||||||  || ||||||||||| || | |||||  |||| |  ||||| |||||| |||| |||||||||||  |||||||    
T  21507947 gggtgatttagggtcaattttgacccaaacatcacccctccaaattgtttttccttctatcctagttgaataagtgatt-tcacatattttttgttttct 21507849  T
Q  189 tttgcttgttttt 201  Q
    || | ||||||||    
T  21507848 ttcgtttgttttt 21507836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 94 - 174
Target Start/End: Complemental strand, 10952403 - 10952323
Alignment:
Q  94 gattttgggtcaattttgacctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacat 174  Q
    ||||| |||||||| ||||  ||||||||||||| | || ||||||| ||| ||||||||||||||||| |||| ||||||    
T  10952403 gatttagggtcaatattgatttgaaatcaccccttcaaattatttttctttttcttttagttaaataagtgattttcacat 10952323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 94 - 174
Target Start/End: Complemental strand, 10960408 - 10960328
Alignment:
Q  94 gattttgggtcaattttgacctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacat 174  Q
    ||||| |||||||| ||||  ||||||||||||| | || ||||||| ||| ||||||||||||||||| |||| ||||||    
T  10960408 gatttagggtcaatattgatttgaaatcaccccttcaaattatttttctttttcttttagttaaataagtgattttcacat 10960328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 189
Target Start/End: Original strand, 19384338 - 19384425
Alignment:
Q  102 gtcaattttgacctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaagttttctt 189  Q
    |||||||||||||  |||| |||||| |||| | ||||| ||||||||||||||||| |||  ||| ||||||||||| || ||||||    
T  19384338 gtcaattttgacccaaaataaccccttcgaaatgtttttctttctcttttagttaaacaagtaattttcacatattttcagctttctt 19384425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 87 - 128
Target Start/End: Original strand, 17949123 - 17949165
Alignment:
Q  87 gatgggtgattttgggtcaatt-ttgacctgaaatcacccctc 128  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  17949123 gatgggtgattttgggtcaattattgacctgaaatcacccctc 17949165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 201
Target Start/End: Original strand, 2968507 - 2968625
Alignment:
Q  86 agatgggtgattttgggtcaattttgacctgaaatcacc---cctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaag 182  Q
    ||||| |||||||  |||||||||||||   ||||||||   |||||||  | ||||| ||| | || || ||||||||| |||| ||||||||||| ||    
T  2968507 agatgagtgatttatggtcaattttgactcaaaatcacctctcctccgagttgtttttctttatattctaattaaataagtgattttcacatatttttag 2968606  T
Q  183 ttttcttttgcttgttttt 201  Q
    |||||||| | ||||||||    
T  2968607 ttttctttcgtttgttttt 2968625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 201
Target Start/End: Original strand, 37612635 - 37612746
Alignment:
Q  90 gggtgattttgggtcaattttga-cctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaagttttct 188  Q
    ||||||||| ||||||||||||| ||  |||||||||||||||| | |||||  |||| |  ||||| |||||| |||| |||||||||||   ||||||    
T  37612635 gggtgatttagggtcaattttgacccaaaaatcacccctccgaattttttttccttctatcctagttgaataagtgatt-tcacatattttttattttct 37612733  T
Q  189 tttgcttgttttt 201  Q
    || | ||||||||    
T  37612734 ttcgtttgttttt 37612746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 201
Target Start/End: Original strand, 374317 - 374376
Alignment:
Q  142 tttctcttttagttaaataagcgattctcacatattttaagttttcttttgcttgttttt 201  Q
    ||||||||||||||||||||  |||| |||| |||||| |||||| ||||| ||||||||    
T  374317 tttctcttttagttaaataaatgattttcacgtattttcagttttattttgtttgttttt 374376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 128
Target Start/End: Original strand, 10649328 - 10649367
Alignment:
Q  90 gggtgattttgggtcaatt-ttgacctgaaatcacccctc 128  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  10649328 gggtgattttgggtcaattcttgacctgaaatcacccctc 10649367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 201
Target Start/End: Original strand, 17331303 - 17331421
Alignment:
Q  83 gtcagatgggtgattttgggtcaattttga-cctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaa 181  Q
    |||||| ||||||||| ||||||||||||| ||  |||||||||||||||  | |||||  |||| | ||| || |||||| |||| |||||||||||      
T  17331303 gtcagaggggtgatttagggtcaattttgacccaaaaatcacccctccgatttgtttttccttctatcttaattgaataagtgatt-tcacatattttct 17331401  T
Q  182 gttttcttttgcttgttttt 201  Q
    ||||||||| | ||||||||    
T  17331402 gttttctttcgtttgttttt 17331421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 26612049 - 26612097
Alignment:
Q  143 ttctcttttagttaaataagcgattctcacatattttaagttttctttt 191  Q
    |||||||||||||||||| | |||| ||||||| ||| |||||||||||    
T  26612049 ttctcttttagttaaatacgtgattttcacatacttttagttttctttt 26612097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 201
Target Start/End: Complemental strand, 39179939 - 39179856
Alignment:
Q  117 aaatcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaagttttcttttgcttgttttt 201  Q
    |||||||||||||||| |||||||  |||| || || || |||||| |||| |||||||||||  ||||||||| | ||||||||    
T  39179939 aaatcacccctccgaattatttttccttctattctaattgaataagtgatt-tcacatattttctgttttctttcgtttgttttt 39179856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 201
Target Start/End: Original strand, 43493854 - 43493965
Alignment:
Q  90 gggtgattttgggtcaattttga-cctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgattctcacatattttaagttttct 188  Q
    ||||||||| ||||||||||||| ||  |||||||| ||||||| | |||||  |||| || || || |||||| |||| |||||||||||  |||||||    
T  43493854 gggtgatttagggtcaattttgatccaaaaatcacctctccgaattgtttttccttctattctaattgaataagtgatt-tcacatattttttgttttct 43493952  T
Q  189 tttgcttgttttt 201  Q
    || | ||||||||    
T  43493953 ttcgtttgttttt 43493965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 167
Target Start/End: Complemental strand, 15813 - 15739
Alignment:
Q  93 tgattttgggtcaattttgacctgaaatcacccctccgaagtatttttatttctcttttagttaaataagcgatt 167  Q
    ||||||| ||||||||||||| ||||||||||  ||  || | ||||| ||||||||||| ||||||||| ||||    
T  15813 tgatttttggtcaattttgacttgaaatcaccaatctaaattgtttttctttctcttttaattaaataagtgatt 15739  T

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