View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7783_high_20 (Length: 252)
Name: NF7783_high_20
Description: NF7783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7783_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 36677339 - 36677102
Alignment:
| Q |
1 |
gctaaacaagtcgtttatgatcctattattttacaattattattgtgcttcaaatatatctactatctatctattaataatatcggtcttgttaacccgt |
100 |
Q |
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| T |
36677339 |
gctaaacaagtcgtttatgatcctatgattttacaattattattgtgcttcaaatatatctactatctatctattaataatatcggtcttgttaacccgt |
36677240 |
T |
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| Q |
101 |
gcacccagttagttgttattatgtttaagtaaattgtataaggaatcttagattttgggtgctttt-aagatgatatttcaagttacgattcgcaaatga |
199 |
Q |
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| T |
36677239 |
gcacccagttagttgttattatgtttaagtaaattgtataaggaatcttagattttgggtgcttttaaagatgatatttcaagttacgattcgcaaatga |
36677140 |
T |
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| Q |
200 |
tgtaatgtaatggaaaattcaaatgaataagtgatgtc |
237 |
Q |
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| T |
36677139 |
tgtaatgtaatggaaaattcaaatgaataagtgatgtc |
36677102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 36687421 - 36687184
Alignment:
| Q |
1 |
gctaaacaagtcgtttatgatcctattattttacaattattattgtgcttcaaatatatctactatctatctattaataatatcggtcttgttaacccgt |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36687421 |
gctaaacaagtcgtttatgatcctatgattttacaattattattgtgcttcaaatatatctactatctatctattaataatatcggtcttgttaacccgt |
36687322 |
T |
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| Q |
101 |
gcacccagttagttgttattatgtttaagtaaattgtataaggaatcttagattttgggtgctttt-aagatgatatttcaagttacgattcgcaaatga |
199 |
Q |
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| T |
36687321 |
gcacccagttagttgttattatgtttaagtaaattgtataaggaatcttagattttgggtgcttttaaagatgatatttcaagttacgattcgcaaatga |
36687222 |
T |
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| Q |
200 |
tgtaatgtaatggaaaattcaaatgaataagtgatgtc |
237 |
Q |
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| T |
36687221 |
tgtaatgtaatggaaaattcaaatgaataagtgatgtc |
36687184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 108 - 230
Target Start/End: Original strand, 36665304 - 36665431
Alignment:
| Q |
108 |
gttagttgttattatgtttaagtaaattgtataaggaatcttagattttgggtgctt-ttaagatgatatttcaagttacgattcgcaa--atg--atgt |
202 |
Q |
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|||||| |||||||||||||||||||||||||| |||||||||||||||| |||||| | ||||| ||||||||||| ||||||| ||| ||| |||| |
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| T |
36665304 |
gttagtggttattatgtttaagtaaattgtatatggaatcttagattttgagtgcttctaaagatcatatttcaagtcacgattcacaatgatgtaatgt |
36665403 |
T |
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| Q |
203 |
aatgtaatggaaaattcaaatgaataag |
230 |
Q |
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| T |
36665404 |
aatgtaatggaaaattcaaatgaataag |
36665431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 36664986 - 36665022
Alignment:
| Q |
28 |
attttacaattattattgtgcttcaaatatatctact |
64 |
Q |
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| T |
36664986 |
attttacaactattattgtgcttcgaatatatctact |
36665022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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