View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7783_low_1 (Length: 570)
Name: NF7783_low_1
Description: NF7783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7783_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 510; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 16 - 554
Target Start/End: Complemental strand, 53036851 - 53036311
Alignment:
| Q |
16 |
gacatcaaaacgaccgctttctttccattgtaaacgaccggctagtggataaaacggcacaaggactttgctcaatgagtctttcaaagtggtggcgatt |
115 |
Q |
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| T |
53036851 |
gacatcaaaacgaccgctttctttccattgtaaacgaccggctagtggataaaacggcacaaggactttgctcaatgagtctttcaaagtggtggcgatt |
53036752 |
T |
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| Q |
116 |
ttattgggggaggtaagccatttttgtggggggcggtaaaagtaaattgttgaaacgtgtgttatgtttccaatttgatcccattcggataatggtaatc |
215 |
Q |
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| T |
53036751 |
ttattgggggaggtaagccatttttgtggggggcggtaaaagtaaattgttgaaacgtgtgttatgtttccaatttgatcccattcggataatggtaatc |
53036652 |
T |
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| Q |
216 |
gaccataccatgttggttccattggtctcacagagtaacaacttttcaatgttacttttgaggaggaggaggatgatgacatgtttgctatcatatttct |
315 |
Q |
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| T |
53036651 |
gaccataccatgttggttccattggtctcacagagtaacaacttttcaatgttacttttgaggaggaggaggatgatgacatgtttgctatcatatttct |
53036552 |
T |
|
| Q |
316 |
gtcacactttttgttagtatagtttgttggatcaaaagttcattggaggtgtgttatata--tatactaattactaagaggttgtggttaattgggaaaa |
413 |
Q |
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| T |
53036551 |
gtcacactttttgatagtatagtttgttggatcaaaaattcattgcaggtgtgttatatatatatactaattactaagaggttgtggttaattgggaaaa |
53036452 |
T |
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| Q |
414 |
ttgaataaacatgagaaaataaaaatgttttgtctttgttgccgtaaatggtgtgttcagttggatgaaatgaatttcctgtgatgatgtttttgttgca |
513 |
Q |
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| T |
53036451 |
ttgaataaacttgagaaaataaaaatgttttgtctttgttgccgtaaatgatgtgttcagttggatgaaatgaatttcctgtgatgatgtttttgttgca |
53036352 |
T |
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| Q |
514 |
tgaaagagtcggaattttagcttgaaattaacccatgcaat |
554 |
Q |
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| T |
53036351 |
tgaaagagtcggaattttagcttgaaattaacccatgcaat |
53036311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 19 - 255
Target Start/End: Original strand, 39996747 - 39996983
Alignment:
| Q |
19 |
atcaaaacgaccgctttctttccattgtaaacgaccggctagtggataaaacggcacaaggactttgctcaatgagtctttcaaagtggtggcgatttta |
118 |
Q |
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| T |
39996747 |
atcaaaacgaccatttcctttcgagtgtaaacgaccggcaagtggataaaacggcacaaggactttgcttaatgactctttcaaagtggtggcgatttta |
39996846 |
T |
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| Q |
119 |
ttgggggaggtaagccatttttgtggggggcggtaaaagtaaattgttgaaacgtgtgttatgtttccaatttgatcccattcggataatggtaatcgac |
218 |
Q |
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| T |
39996847 |
gtgggggaggtaagccagttttttgggggctggtaaaagtatattgttggcacgtgtgctatgattccaatctgatcccattcggataatggtaaacggc |
39996946 |
T |
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| Q |
219 |
cataccatgttggttccattggtctcacagagtaaca |
255 |
Q |
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| T |
39996947 |
cacaccatgttggttccattggtctcacatagtaaca |
39996983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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