View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7783_low_13 (Length: 379)
Name: NF7783_low_13
Description: NF7783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7783_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 1417598 - 1417962
Alignment:
| Q |
1 |
tcaaggaataatgcctgacaggctcacatataacacactaattttagcatgtgttcagagtgaaaagttggatgttgccatgcaattatttggggaaatg |
100 |
Q |
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| T |
1417598 |
tcaaggaataatgcctgacaggctcacatataacacactaattttagcatgtgttcagagtgaaaagttggatgttgccatgcaattatttggggaaatg |
1417697 |
T |
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| Q |
101 |
aaggtaataacttttatttgaaatataactttaatagttttgtgctagataaatctggaccttctaaattccaaccttttatattataggaaaaagcgca |
200 |
Q |
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| T |
1417698 |
aaggtaataacttttatttgaaatataactttaatagttttgtgctagataaatctggaccttctaaattccaaccttttatattataggaaaaagcgca |
1417797 |
T |
|
| Q |
201 |
ggaattcatccatgatgatctgtttccagatatcgttacatacacaacattgctcaaggtcagatttcttaaatttactcacttgtaatattagtttgtt |
300 |
Q |
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| T |
1417798 |
ggaattcatccatgatgatctgtttccagatatcgttacatacacaacattgctcaaggtcagatttcttaaatttactcacttgtaatattagtttgtt |
1417897 |
T |
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| Q |
301 |
gtagtacaaaaccattaaaatttaaatcaagttttgttttattctgtagaacgttttggttgttg |
365 |
Q |
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| T |
1417898 |
gtagtacgaaaccattaaaatttaaatcaagttttgttttattctgtagaacgttttggttgttg |
1417962 |
T |
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