View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7783_low_17 (Length: 349)
Name: NF7783_low_17
Description: NF7783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7783_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 16 - 335
Target Start/End: Complemental strand, 1875284 - 1874965
Alignment:
| Q |
16 |
gacatcaggtggttccgacggcggtcgatactcgctaaagttaaacgtcatgagaggattttcatttagagaaccttgatcattatcnnnnnnntccaat |
115 |
Q |
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| T |
1875284 |
gacatcaggtggttccgacggcggtcgatactcgctaaagttaaacgtcatgagaggattttcatttagagaaccttgatcattatcaaaaaaatccaat |
1875185 |
T |
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| Q |
116 |
ggtaaggcgctatgtagtggaaattgaaagagaaggtatagctgtttggccatcaccatattcttctgatcctttcttattatgagacttatctttttta |
215 |
Q |
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| T |
1875184 |
ggtaaggcgctatgtagtggaaattgaaagagaaggtatagctgtttggccatcaccatattcttctgatcctttcttattatgagacttatctttttta |
1875085 |
T |
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| Q |
216 |
gtggctcgtagttttttattcactcctatgtttgaagtccaatgcatattattttgttttctacaaatgcatgcattttcgtcgactgaaggattactat |
315 |
Q |
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| T |
1875084 |
gtggctcgtagttttttattcactcctatgtttgaagtccaatgcatattattttgttttctacaaatgcatgcattttcgtcgatagaaggattactat |
1874985 |
T |
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| Q |
316 |
ccgtagagctattaatcttg |
335 |
Q |
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| T |
1874984 |
ccgtagagctattaatcttg |
1874965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 41 - 194
Target Start/End: Complemental strand, 1885515 - 1885363
Alignment:
| Q |
41 |
cgatactcgctaaagttaaacgtcatgagaggattttcatttagagaaccttgatcattatcnnnnnnntccaatggtaaggcgctatgtagtggaaatt |
140 |
Q |
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| T |
1885515 |
cgataatcactaatgttaaacgtcacgaaaggattgtcatttagagaaccttgatcattat-aaaaatatccaattgtaaggcactctgtagtggaaatt |
1885417 |
T |
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| Q |
141 |
gaaagagaaggtatagctgtttggccatcaccatattcttctgatcctttctta |
194 |
Q |
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| T |
1885416 |
gaaagagaaggtatggctgtttggctatcaccatattcttctgatcatttctta |
1885363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 1884232 - 1884150
Alignment:
| Q |
188 |
tttcttattatgagacttatcttttttagtggctcgtagttttttattcactcctatgtttgaagtccaatgcatattattttg |
271 |
Q |
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| T |
1884232 |
tttcttattatgagacttat-ttttttagtggctcgtagttttttattcactcctatgtttgaagtccaatgcatattattttg |
1884150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 172 - 271
Target Start/End: Complemental strand, 3417914 - 3417815
Alignment:
| Q |
172 |
catattcttctgatcctttcttattatgagacttatcttttttagtggctcgtagttttttattcactcctatgtttgaagtccaatgcatattattttg |
271 |
Q |
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| T |
3417914 |
catattcttctgatccttttctatgatgagatttctcttttttagttgctcgtggtttttgattcactcccatgttagaagaccaatgcatattattttg |
3417815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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