View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7783_low_21 (Length: 321)
Name: NF7783_low_21
Description: NF7783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7783_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 2151155 - 2150851
Alignment:
| Q |
1 |
gttagggcttaagccctacccaaatggttaattatttaggtgttgggaacctcgtggtttaagtaccacattgattttatctattcaatatgaaattcat |
100 |
Q |
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| T |
2151155 |
gttagggcttaagccctacccaaatggttaattatttaggtgttgggaacctcgtggcttaagtatcacattgattttatctattcaatatgaaattcat |
2151056 |
T |
|
| Q |
101 |
aacattcttacatttttgaagagtcggaagttattcttcatgcttccgaaatttctccaattcactctaaaattattcattttcgtccaattattaggac |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2151055 |
aacattcttatatttttgaagagtcggaagttattcttcatgctttcgaaatttctccaattcactctaaaattatccattttcgtccaattattaggac |
2150956 |
T |
|
| Q |
201 |
ttgagctcatgagtagagttcaatccaaaagactaattcattaggttgagagcatttcataacttgagaatttcattgaaaacttttatctatttgtatg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2150955 |
ttgagctcatgagtagagttcaatccaaaagactaattcattaggttgagaacatttcatgacttgagaatttcattgaaaacttttatctatttgtatg |
2150856 |
T |
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| Q |
301 |
agatt |
305 |
Q |
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||||| |
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| T |
2150855 |
agatt |
2150851 |
T |
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