View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7783_low_29 (Length: 274)
Name: NF7783_low_29
Description: NF7783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7783_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 9e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 52 - 247
Target Start/End: Original strand, 53636839 - 53637030
Alignment:
| Q |
52 |
gatggagcattatacacaaaatt-aagtatttgtctctgaaagaattggagaataattttttgcttgcatataatatctctttagttaaactgagaaata |
150 |
Q |
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| T |
53636839 |
gatggagcattatacacaaaatttaagtatttgtctctgaaagaattggagaataattttttgcttgcatataatatctctttagttaaaccgagaaata |
53636938 |
T |
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| Q |
151 |
tccactaattgaaagattctattgttagatcctctaccctctatgnnnnnnntactttctattctatggtcattcaacatgaaagacagaataatct |
247 |
Q |
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| T |
53636939 |
tccactaattgaaagattctattgttagatcctctaccctctatgaaaaaaatact-----ttctatggtcattcaacatgaaagacagaataatct |
53637030 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 133
Target Start/End: Complemental strand, 48333366 - 48333292
Alignment:
| Q |
57 |
agcattatacacaaaattaagtatttgtctctgaaagaattggagaataattttttgcttgcatataatatctcttt |
133 |
Q |
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| T |
48333366 |
agcattatacacaaatataagtatttgtcactca--gacttggaggataactttttgcttgcctattatatctcttt |
48333292 |
T |
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