View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7783_low_36 (Length: 254)

Name: NF7783_low_36
Description: NF7783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7783_low_36
NF7783_low_36
[»] chr4 (11 HSPs)
chr4 (19-241)||(2471032-2471254)
chr4 (49-231)||(2459557-2459726)
chr4 (66-195)||(5103191-5103320)
chr4 (67-227)||(5094137-5094293)
chr4 (127-195)||(5107348-5107417)
chr4 (94-231)||(2462372-2462504)
chr4 (66-231)||(2476476-2476635)
chr4 (66-201)||(2622073-2622203)
chr4 (54-120)||(2369248-2369313)
chr4 (19-68)||(2466429-2466479)
chr4 (31-91)||(2490012-2490072)
[»] chr6 (1 HSPs)
chr6 (20-108)||(8286103-8286191)
[»] chr8 (1 HSPs)
chr8 (19-108)||(26373192-26373282)


Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 2471032 - 2471254
Alignment:
Q  19 ccaacgtgttcttgtttgttatagagttgtacttgaattctgttttacatctaaggagcacgctttaaagactcttgcagcatttttactttttatgctc 118  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  2471032 ccaacgtgttcttgtttgttatagcgttgtacttgaattctgttttacatctacggagcacgctttaaagactcttgcagcatttttactttttatgctc 2471131  T
Q  119 ttcaagcgtaaataaataataaatgaattatgctgcctaatgtctggctgtattgaaaaatataatagtgaaagttattgaatgaatattgataaagaaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  2471132 ttcaagcgtaaataaataataaatgaattatgctgcctaatgtctggctgtattgaaaactatgatagtgaaagttattgaatgaatattgataaagaaa 2471231  T
Q  219 ccataacaaacaatattgatgtc 241  Q
    |||||||||||||||||||||||    
T  2471232 ccataacaaacaatattgatgtc 2471254  T

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Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 49 - 231
Target Start/End: Original strand, 2459557 - 2459726
Alignment:
Q  49 acttgaattctgttttacatctaaggagcacgctttaaagactcttgcagcatttttactttttatgctcttcaagcgtaaataaataataaatgaatta 148  Q
    |||||||||||||||||||||||||||| ||  ||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||| ||          
T  2459557 acttgaattctgttttacatctaaggagtacaatttaaaggctcttgcatcatttttactttttatgctcttcaagcttaaataaataatatat------ 2459650  T
Q  149 tgctgcctaatgtctggctgtattgaaaaatataatagtgaaagttattgaatgaatattgataaagaaaccataacaaacaa 231  Q
       |||||||||||||||| ||||||||| |||||| |||||||||||    | ||||||||| |||||||||||||||||||    
T  2459651 ---tgcctaatgtctggctttattgaaaactataattgtgaaagttat----taaatattgatgaagaaaccataacaaacaa 2459726  T

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Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 66 - 195
Target Start/End: Complemental strand, 5103320 - 5103191
Alignment:
Q  66 catctaaggagcacgctttaaagactcttgcagcatttttactttttatgctcttcaagcgtaaataaataataaat-gaattatgctgcctaatgtctg 164  Q
    |||||||||||||   |||||||| ||| | | ||||||||||||||||||||||||||| |||| ||||||||||| | |||||||||| |||||||||    
T  5103320 catctaaggagcattatttaaagattct-gtatcatttttactttttatgctcttcaagcctaaagaaataataaatggtattatgctgcttaatgtctg 5103222  T
Q  165 gctgtattgaaaaatataatagtgaaagtta 195  Q
    |||||||| |||||| |||| ||||||||||    
T  5103221 gctgtattaaaaaatgtaattgtgaaagtta 5103191  T

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Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 67 - 227
Target Start/End: Complemental strand, 5094293 - 5094137
Alignment:
Q  67 atctaaggagcacgctttaaagactcttgcagcatttttactttttatgctcttcaagcgtaaataaataataaat-gaattatgctgcctaatgtctgg 165  Q
    |||||| ||||||| || ||||| ||| ||| |||||||||||||||| |||||||||| ||||| |||||||||| ||||||||||||  ||| |||||    
T  5094293 atctaaagagcacgattaaaagattct-gcatcatttttactttttatactcttcaagcctaaat-aataataaatggaattatgctgctaaatatctgg 5094196  T
Q  166 ctgtattgaaaaatataa-tagtgaaagttattgaatgaatattgataaagaaaccataacaa 227  Q
    |||||||||||| ||||| |  | ||||||||    ||||||||||| |||||||||||||||    
T  5094195 ctgtattgaaaactataactgttaaaagttat----tgaatattgatgaagaaaccataacaa 5094137  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 5107417 - 5107348
Alignment:
Q  127 taaataaataataaatga-attatgctgcctaatgtctggctgtattgaaaaatataatagtgaaagtta 195  Q
    |||||||||||||||||  |||||||||| |||| ||||||||||||||||| |||||||||||||||||    
T  5107417 taaataaataataaatggtattatgctgcttaatatctggctgtattgaaaactataatagtgaaagtta 5107348  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 94 - 231
Target Start/End: Original strand, 2462372 - 2462504
Alignment:
Q  94 tgcagcatttttactttttatgctcttcaagcgtaaataaataataaat-gaattatgctgcctaatgtctggctgtattgaaaaatataatagtgaaag 192  Q
    |||| ||||||||||||||||||||||||||| ||||||||||| |||| | |||||| | || || |||||| || ||| |||| ||||||||||||||    
T  2462372 tgcatcatttttactttttatgctcttcaagcttaaataaataaaaaatggtattatgattcc-aacgtctggttg-attaaaaactataatagtgaaag 2462469  T
Q  193 ttattgaatgaatattgataaagaaaccataacaaacaa 231  Q
    ||||    | |||||| || | |||||||||||||||||    
T  2462470 ttat----tcaatattaattatgaaaccataacaaacaa 2462504  T

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Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 66 - 231
Target Start/End: Original strand, 2476476 - 2476635
Alignment:
Q  66 catctaaggagcacgctttaaagactcttgcagcatttttactttttatgctcttcaagcgtaaataaataataaatga-attatgctgcctaatgtctg 164  Q
    ||||||||||||||  || ||||| ||| ||| ||||||||| |||| |||||||||||| ||||||||||| |||||  |||||||| || ||||||||    
T  2476476 catctaaggagcacaattaaaagattct-gcatcatttttaccttttttgctcttcaagcttaaataaataaaaaatggtattatgcttcc-aatgtctg 2476573  T
Q  165 gctgtattgaaaaatataatagtgaaagttattgaatgaatattgataaagaaaccataacaaacaa 231  Q
    |  | |||||||| |||| |||||||||||||| |||    ||| || | |||||||||||||||||    
T  2476574 gtcg-attgaaaactatagtagtgaaagttattcaat----attaattacgaaaccataacaaacaa 2476635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 201
Target Start/End: Complemental strand, 2622203 - 2622073
Alignment:
Q  66 catctaaggagcacgctttaaagactcttgcagcatttttactttttatgctcttcaagcgtaaataaataataaatgaattatgctgcctaatgtctgg 165  Q
    |||||||||||| || ||||||||||||| || || ||||||||| || ||||||| ||| ||||   ||| ||   | |||||| || ||||||||| |    
T  2622203 catctaaggagc-cgatttaaagactcttacatcagttttactttgtacgctcttcgagcttaaaagcatagta---gtattatgttgtctaatgtctag 2622108  T
Q  166 ctgtattgaaaaatataatagtgaaagttattgaat 201  Q
    |||||||||||| |||||| ||| ||||||||||||    
T  2622107 ctgtattgaaaagtataattgtg-aagttattgaat 2622073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 2369313 - 2369248
Alignment:
Q  54 aattctgttttacatctaaggagcacgctttaaagactcttgcagcatttttactttttatgctctt 120  Q
    |||||| ||||| ||| |||||||||  |||||||| ||| ||| ||||||||||||||||||||||    
T  2369313 aattcttttttatatccaaggagcaccatttaaagattct-gcaacatttttactttttatgctctt 2369248  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 2466429 - 2466479
Alignment:
Q  19 ccaacgtgttcttgtttgttatagagttgtac-ttgaattctgttttacat 68  Q
    ||||||||||| ||||||||||||| ||| || ||||||||||||||||||    
T  2466429 ccaacgtgttcatgtttgttatagacttgaactttgaattctgttttacat 2466479  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 2490012 - 2490072
Alignment:
Q  31 tgtttgttatagagttgtacttgaattctgttttacatctaaggagcacgctttaaagact 91  Q
    ||||||||||| | ||| ||| |||||||||||| | | ||||||||||| ||||||||||    
T  2490012 tgtttgttataaacttgaactcgaattctgttttgcctataaggagcacgatttaaagact 2490072  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 8286191 - 8286103
Alignment:
Q  20 caacgtgttcttgtttgttatagagttgtacttgaattctgttttacatctaaggagcacgctttaaagactcttgcagcatttttact 108  Q
    |||| ||||| |||||||||||||  |  |||||| ||||||||| |||||||||| || | |||||||||||||||| ||||||||||    
T  8286191 caacatgttcatgtttgttatagacgttaacttgagttctgttttgcatctaaggaacatgatttaaagactcttgcatcatttttact 8286103  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 26373192 - 26373282
Alignment:
Q  19 ccaacgtgttcttgtttgttatagagttgtactt-gaattctgttttacatctaaggagcacgctttaaagactcttgcagcatttttact 108  Q
    ||||| ||||| |||||||||| || ||| |||| || || |||||| ||| ||||||||| | || ||||||||||||| ||||||||||    
T  26373192 ccaacatgttcatgtttgttattgacttgaacttagagttatgttttgcatataaggagcatgattcaaagactcttgcatcatttttact 26373282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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