View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7783_low_4 (Length: 525)
Name: NF7783_low_4
Description: NF7783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7783_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 19 - 511
Target Start/End: Original strand, 5950424 - 5950916
Alignment:
| Q |
19 |
caaagtgagttgatcttcaccatgtgaaaaccttgtacacttgtgactcatgatgggatgtttatcgtttcttgtagaagccacgttatgatactggtcg |
118 |
Q |
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| T |
5950424 |
caaagtgagttgatcttcaccatgtgaaaaccttgtacacttgtgactcatgatgggatgtttattgtttcttgtagaagccacgttatgatactggtcg |
5950523 |
T |
|
| Q |
119 |
tccacagaacaaaaattcaagtcgaaatatgtatatgaagagcataacgagctgtcatcatcgaacgtatcatctacaaaaacagtttatcaggtcaatc |
218 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5950524 |
tccacagaacaaaaattcaagtcggaatatgtatatgaagagcataacgagctgtcataatcaaacgtatcatctacaaaaacagtttatcaggtcaatc |
5950623 |
T |
|
| Q |
219 |
atttcaggacatcattgaaataggacatccacaacatagcttgtgaagggaaaaagaagacgtaccatggtgccagcgatatccatttgatatgtcatca |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5950624 |
atttcaggacatcattgaaataggacatccacaacatagcttgtgaagggaaaaagaagacgtaccagggtgccagcgatatccatttgatatgtcatca |
5950723 |
T |
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| Q |
319 |
gctctattgactgcacccgacaatgattcttgtgacgatgaaacagaagagacagagggaaaatgatgataacgacgaggacttgcattattctcgtcgt |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5950724 |
actctattgactgcacccgacaatgattcttgtgacgatgaaacagaagagacagagggaaaatgatgataacgacgaggacttgcattattctcgtcgt |
5950823 |
T |
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| Q |
419 |
ctggataactgttcgtcctatctggaagtagcattgatatctctgcttcaatcatagtagcaatttcagaaggatcccaatttgtgatgtcca |
511 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5950824 |
cttgataactgttcgtcctatctggaagtagcattgatatctctgcttcaatcatagtagcaatttcagaaggatcccaatttgtgatgtcca |
5950916 |
T |
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