View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7783_low_41 (Length: 236)
Name: NF7783_low_41
Description: NF7783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7783_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 44885688 - 44885480
Alignment:
| Q |
18 |
tgctttccaaaaaatggttccatgagcttgtacttttcactatttgcatgaagaaggcgtggaaagtcgcaagcaagatgataaatagcatgtataccaa |
117 |
Q |
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| T |
44885688 |
tgctttccaaaaaatggttccatgagcttgtacttttcactatttgcatgaagaaggcgtggaaagtcgcaagcaagatgataaatagcatgtataccaa |
44885589 |
T |
|
| Q |
118 |
ctccaattgctactgccacagctattacctgcaaattacatattaacatgtgcattaaatcacttgttagcaagaatgtggattttgtccttttatcatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44885588 |
ctccaattgctactgccacagctattacctgcaaattacatattaacatgtgcattaaatcacttgttagcaagaatgtggattttgtccttttatcatt |
44885489 |
T |
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| Q |
218 |
ctctgatgt |
226 |
Q |
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||||||||| |
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| T |
44885488 |
ctctgatgt |
44885480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 44915327 - 44915194
Alignment:
| Q |
18 |
tgctttccaaaaaatggttccatgagcttgtacttttcactatttgcatgaagaaggcgtggaaagtcgcaagcaagatgataaatagcatgtataccaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
44915327 |
tgctttccaaaaaatggttccatgagcttgtacttttcactatttgcatgaagaaggcgaggaaagtcgcaagtaagatgataaatagcatgtataccaa |
44915228 |
T |
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| Q |
118 |
ctccaattgctactgccacagctattacctgcaa |
151 |
Q |
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||||| |||||||||||||||| || |||||||| |
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| T |
44915227 |
ctccagttgctactgccacagcaatcacctgcaa |
44915194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 44899072 - 44898933
Alignment:
| Q |
18 |
tgctttccaaaaaatggttccatgagcttgtacttttcactatttgcatgaagaaggcgtggaaagtcgcaagcaagatgataaatagcatgtataccaa |
117 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| || |||| ||| | |||||||| ||||||||||||||||||||||||||||||| |
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| T |
44899072 |
tgctttccaaaaaatggttccatgagctcgtacttttcactattcgcgtgaataagactaggaaagtcacaagcaagatgataaatagcatgtataccaa |
44898973 |
T |
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| Q |
118 |
ctccaattgctactgccacagctattacctgcaaattaca |
157 |
Q |
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|||||||||||| ||| |||||||||| ||||||| |||| |
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| T |
44898972 |
ctccaattgctattgcaacagctattatctgcaaaataca |
44898933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 42 - 152
Target Start/End: Complemental strand, 39982945 - 39982835
Alignment:
| Q |
42 |
agcttgtacttttcactatttgcatgaagaaggcgtggaaagtcgcaagcaagatgataaatagcatgtataccaactccaattgctactgccacagcta |
141 |
Q |
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||||||||||||||| | |||||||||||| ||| ||||| || |||||||||||||||||||||||||||||||| |||||||||| ||||| ||||| |
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| T |
39982945 |
agcttgtacttttcattgcttgcatgaagaatgcgaggaaaatcacaagcaagatgataaatagcatgtataccaacaccaattgctattgccagagcta |
39982846 |
T |
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| Q |
142 |
ttacctgcaaa |
152 |
Q |
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| | ||||||| |
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| T |
39982845 |
tcatctgcaaa |
39982835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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