View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7783_low_42 (Length: 232)
Name: NF7783_low_42
Description: NF7783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7783_low_42 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
| [»] chr3 (4 HSPs) |
| |
|
| [»] scaffold0051 (1 HSPs) |
| | |
|
| [»] scaffold0108 (1 HSPs) |
| | |
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| [»] scaffold0064 (1 HSPs) |
| | |
|
| [»] scaffold0319 (2 HSPs) |
| | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
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| [»] scaffold0304 (2 HSPs) |
| | |
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| [»] scaffold0040 (1 HSPs) |
| | |
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| [»] scaffold0897 (1 HSPs) |
| | |
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| [»] scaffold0282 (1 HSPs) |
| | |
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| [»] scaffold0001 (1 HSPs) |
| | |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 8e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 5 - 232
Target Start/End: Complemental strand, 14329133 - 14328906
Alignment:
| Q |
5 |
tctctgcgatagcgcgcgaggtttcttgtctccaagagagaccagaaatcacaaaaaagggtagcagtatcaggtgtgataccgtcaagcgccctcagta |
104 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||| ||||||||||||||| |||||| ||||| | |||||||||||||||||||||||||||||| | |
|
|
| T |
14329133 |
tctctgcgatagcgcgcgacgtttcgtgtctccaaaagagaccagaaatcatgaaaaagtgtagcggcatcaggtgtgataccgtcaagcgccctcagca |
14329034 |
T |
|
| Q |
105 |
gtacatcgaagtacagagcggtcacagagccagcatccatagcattcttcagcaagcctttgacggtagggatacagggctcagggtctagcatgaactg |
204 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||| || ||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
14329033 |
gtacgtcgaagtacagagcggtcacagagccagcatccatggcattcttcagcaaaccttagatggtagggatgcagggctcagggtccagcatgaactg |
14328934 |
T |
|
| Q |
205 |
ggtacacctcaaaatgcagaacatgtga |
232 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
14328933 |
ggtacacctcaaaatgcagaacatgtga |
14328906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 71 - 229
Target Start/End: Complemental strand, 18166702 - 18166544
Alignment:
| Q |
71 |
gtatcaggtgtgataccgtcaagcgccctcagtagtacatcgaagtacagagcggtcacagagccagcatccatagcattcttcagcaagcctttgacgg |
170 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| | |||||| ||||| |||||||||||||| |||||||||||||| ||| | ||||| | ||||||| |
|
|
| T |
18166702 |
gtatcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatagcgttcctaagcaaacgcttgacgg |
18166603 |
T |
|
| Q |
171 |
tagggatacagggctcagggtctagcatgaactgggtacacctcaaaatgcagaacatg |
229 |
Q |
| |
|
|||| || || |||||| || |||||||| || || || ||||||||||| |||||| |
|
|
| T |
18166602 |
taggaatgcatggctcaacatccagcatgaattgagtgcatctcaaaatgcaaaacatg |
18166544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 5 - 232
Target Start/End: Complemental strand, 14688602 - 14688375
Alignment:
| Q |
5 |
tctctgcgatagcgcgcgaggtttcttgtctccaagagagaccagaaatcacaaaaaagggtagcagtatcaggtgtgataccgtcaagcgccctcagta |
104 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||||| |||||| |||||| ||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
14688602 |
tctctgcgatagcgcgcgacgtttcttgtctccaaaagagaccaaaaatcatgaaaaagtgtagcggtatcaggtgtgataccgtcaagcgccctcagca |
14688503 |
T |
|
| Q |
105 |
gtacatcgaagtacagagcggtcacagagccagcatccatagcattcttcagcaagcctttgacggtagggatacagggctcagggtctagcatgaactg |
204 |
Q |
| |
|
| || ||||| ||||| ||||||||||||||||||||||| |||||||||| ||| |||| || ||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
14688502 |
gcacgtcgaaatacagggcggtcacagagccagcatccatggcattcttcaacaaaccttggatggtagggatgcagggctcagggtccagcatgaactg |
14688403 |
T |
|
| Q |
205 |
ggtacacctcaaaatgcagaacatgtga |
232 |
Q |
| |
|
||| |||||||||||||||||||||||| |
|
|
| T |
14688402 |
ggtgcacctcaaaatgcagaacatgtga |
14688375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 2 - 232
Target Start/End: Original strand, 10787188 - 10787418
Alignment:
| Q |
2 |
atctctctgcgatagcgcgcgaggtttcttgtctccaagagagaccagaaatcacaaaaaagggtagcagtatcaggtgtgataccgtcaagcgccctca |
101 |
Q |
| |
|
|||||||||||||||||||| | |||| |||||||||| ||||||||||||||| |||||| |||| | |||| || ||| ||||| ||||||||||| |
|
|
| T |
10787188 |
atctctctgcgatagcgcgcaacgttttttgtctccaaaagagaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctca |
10787287 |
T |
|
| Q |
102 |
gtagtacatcgaagtacagagcggtcacagagccagcatccatagcattcttcagcaagcctttgacggtagggatacagggctcagggtctagcatgaa |
201 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||||| ||||||||||||| || |||||||| ||||||||| || ||||||||||||||||||||||| |
|
|
| T |
10787288 |
gcagtacatcgaagtacagggcggtcacagagccagcgtccatagcattctgcaacaagccttggacggtaggaatgcagggctcagggtctagcatgaa |
10787387 |
T |
|
| Q |
202 |
ctgggtacacctcaaaatgcagaacatgtga |
232 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |
|
|
| T |
10787388 |
ctgggtacacctcagaatgcagaacatgtga |
10787418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 5 - 231
Target Start/End: Complemental strand, 7360604 - 7360378
Alignment:
| Q |
5 |
tctctgcgatagcgcgcgaggtttcttgtctccaagagagaccagaaatcacaaaaaagggtagcagtatcaggtgtgataccgtcaagcgccctcagta |
104 |
Q |
| |
|
||||| ||||||||||||| ||||| ||||||||| |||||| |||||||| |||||| | ||| | ||||||||||| |||||||||||||||||| | |
|
|
| T |
7360604 |
tctctacgatagcgcgcgacgtttcgtgtctccaaaagagacaagaaatcatgaaaaagtgcagcggcatcaggtgtgacaccgtcaagcgccctcagca |
7360505 |
T |
|
| Q |
105 |
gtacatcgaagtacagagcggtcacagagccagcatccatagcattcttcagcaagcctttgacggtagggatacagggctcagggtctagcatgaactg |
204 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |||||||||| || |||| || |||||||| ||||||||||| || ||||||||||| |
|
|
| T |
7360504 |
gtacgtcgaagtacagagcggtcacagagccagcatccatggcattcttcaagaaaccttggatggtagggacgcagggctcaggatccagcatgaactg |
7360405 |
T |
|
| Q |
205 |
ggtacacctcaaaatgcagaacatgtg |
231 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
7360404 |
ggtacacctcaaaatgcagaacatgtg |
7360378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 153
Target Start/End: Original strand, 10158039 - 10158120
Alignment:
| Q |
72 |
tatcaggtgtgataccgtcaagcgccctcagtagtacatcgaagtacagagcggtcacagagccagcatccatagcattctt |
153 |
Q |
| |
|
||||||| | |||||||||||||||||||| | |||||| ||||| || ||| |||| |||||| |||||||||||||||| |
|
|
| T |
10158039 |
tatcaggagagataccgtcaagcgccctcaacattacatcaaagtaaagcgcgctcacggagccatcatccatagcattctt |
10158120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 11 - 231
Target Start/End: Original strand, 24954749 - 24954969
Alignment:
| Q |
11 |
cgatagcgcgcgaggtttcttgtctccaagagagaccagaaatcacaaaaaagggtagcagtatcaggtgtgataccgtcaagcgccctcagtagtacat |
110 |
Q |
| |
|
||||| ||||||| ||||| |||||||| ||||||||||||||| |||||| ||||| | |||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
24954749 |
cgatatcgcgcgacgtttcgtgtctccagaagagaccagaaatcatgaaaaagtgtagcggcatcaggtgtgataccgtcaagcgccctcagcagtacgt |
24954848 |
T |
|
| Q |
111 |
cgaagtacagagcggtcacagagccagcatccatagcattcttcagcaagcctttgacggtagggatacagggctcagggtctagcatgaactgggtaca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||| || ||||||||||| | ||||||||||||||| |
|
|
| T |
24954849 |
cgaagtacagagcggtcacagagccagcatccatggcattcttcagcaagccttggatggtagggatgcaaggctcagggtccaacatgaactgggtaca |
24954948 |
T |
|
| Q |
211 |
cctcaaaatgcagaacatgtg |
231 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
24954949 |
cctcaaaatgcagaacatgtg |
24954969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 229
Target Start/End: Complemental strand, 23195994 - 23195767
Alignment:
| Q |
2 |
atctctctgcgatagcgcgcgaggtttcttgtctccaagagagaccagaaatcacaaaaaagggtagcagtatcaggtgtgataccgtcaagcgccctca |
101 |
Q |
| |
|
||||| |||||||| ||||| | ||| |||||||||| |||||||| || ||| || || ||| |||||||| ||||||||||||||||| |||| |
|
|
| T |
23195994 |
atctccctgcgataacgcgcaacattttttgtctccaaaagagaccaaaagtcattgaagagttcagcggtatcaggagtgataccgtcaagcgctctca |
23195895 |
T |
|
| Q |
102 |
gtagtacatcgaagtacagagcggtcacagagccagcatccatagcattcttcagcaagcctttgacggtagggatacagggctcagggtctagcatgaa |
201 |
Q |
| |
|
| | |||||| ||||| |||||||||||||| ||||||||||||| ||| | ||||| | ||||||||||| || || |||||| ||| |||||||| |
|
|
| T |
23195894 |
gcattacatcaaagtaaagagcggtcacagaaccagcatccatagtgttcctaagcaaacacttgacggtaggaatgcatggctcaacgtccagcatgaa |
23195795 |
T |
|
| Q |
202 |
ctgggtacacctcaaaatgcagaacatg |
229 |
Q |
| |
|
|| || || ||||||||||| |||||| |
|
|
| T |
23195794 |
ttgagtgcatctcaaaatgcaaaacatg |
23195767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 74 - 229
Target Start/End: Complemental strand, 23621526 - 23621371
Alignment:
| Q |
74 |
tcaggtgtgataccgtcaagcgccctcagtagtacatcgaagtacagagcggtcacagagccagcatccatagcattcttcagcaagcctttgacggtag |
173 |
Q |
| |
|
||||| ||||||||||||||||| ||||| | |||||| ||||| |||||||||||||| |||||||||||||||||| | ||||| | ||| ||||||| |
|
|
| T |
23621526 |
tcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatagcattcctaagcaaacgtttaacggtag |
23621427 |
T |
|
| Q |
174 |
ggatacagggctcagggtctagcatgaactgggtacacctcaaaatgcagaacatg |
229 |
Q |
| |
|
| || || |||||| ||||||||||| || || || |||||||| || |||||| |
|
|
| T |
23621426 |
gaatgcatggctcaatatctagcatgaattgagtgcatctcaaaatacaaaacatg |
23621371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 229
Target Start/End: Original strand, 22643436 - 22643584
Alignment:
| Q |
81 |
tgataccgtcaagcgccctcagtagtacatcgaagtacagagcggtcacagagccagcatccatagcattcttcagcaagcctttgacggtagggataca |
180 |
Q |
| |
|
|||||||||||||||| ||||| | |||||| ||||| |||||||||||||| ||||||||||| || ||| | ||||| | ||||| |||| || || |
|
|
| T |
22643436 |
tgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatggcgttcctaagcaaacgcttgacaataggaatgca |
22643535 |
T |
|
| Q |
181 |
gggctcagggtctagcatgaactgggtacacctcaaaatgcagaacatg |
229 |
Q |
| |
|
|||||| || |||||||| || || || ||||||||||| |||||| |
|
|
| T |
22643536 |
tggctcaacatccagcatgaattgagtgcatctcaaaatgcaaaacatg |
22643584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 2 - 228
Target Start/End: Original strand, 1730006 - 1730232
Alignment:
| Q |
2 |
atctctctgcgatagcgcgcgaggtttcttgtctccaagagagaccagaaatcacaaaaaagggtagcagtatcaggtgtgataccgtcaagcgccctca |
101 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||| |||| | |||| || ||| | ||| |||| |||||| |
|
|
| T |
1730006 |
atctctctgcgatagcgcgcgacgtttcttgtctccaaaagagaccagaaatcatgaaaaagtctagcggaatcaagtctgacatcgttaagcaccctca |
1730105 |
T |
|
| Q |
102 |
gtagtacatcgaagtacagagcggtcacagagccagcatccatagcattcttcagcaagcctttgacggtagggatacagggctcagggtctagcatgaa |
201 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||| ||||||||| |||||||||||||||| |||||||| |
|
|
| T |
1730106 |
gcagtacatcgaagtacagggcggtcacagagccagcgtccatagcattcttcagcaaaccttggacggtaggaatacagggctcagggtacagcatgaa |
1730205 |
T |
|
| Q |
202 |
ctgggtacacctcaaaatgcagaacat |
228 |
Q |
| |
|
||| ||||||||||||||||||||||| |
|
|
| T |
1730206 |
ctgagtacacctcaaaatgcagaacat |
1730232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 151
Target Start/End: Complemental strand, 22338649 - 22338584
Alignment:
| Q |
86 |
ccgtcaagcgccctcagtagtacatcgaagtacagagcggtcacagagccagcatccatagcattc |
151 |
Q |
| |
|
||||| || |||||||| | ||||| ||||| || ||| |||||||||||||||||||||||||| |
|
|
| T |
22338649 |
ccgtcgagtgccctcagcatgacatcaaagtagagcgcgctcacagagccagcatccatagcattc |
22338584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 9e-57; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 85 - 228
Target Start/End: Complemental strand, 41375500 - 41375357
Alignment:
| Q |
85 |
accgtcaagcgccctcagtagtacatcgaagtacagagcggtcacagagccagcatccatagcattcttcagcaagcctttgacggtagggatacagggc |
184 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||| || |||||| |
|
|
| T |
41375500 |
accgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccagcgtccatagcattcttcagcaagccttggacggtaggaatgcagggc |
41375401 |
T |
|
| Q |
185 |
tcagggtctagcatgaactgggtacacctcaaaatgcagaacat |
228 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
41375400 |
tcagggtccagcatgaactgggtacacctcaaaatgcagaacat |
41375357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 2 - 228
Target Start/End: Original strand, 22081005 - 22081231
Alignment:
| Q |
2 |
atctctctgcgatagcgcgcgaggtttcttgtctccaagagagaccagaaatcacaaaaaagggtagcagtatcaggtgtgataccgtcaagcgccctca |
101 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||| ||||||||||||||| ||| || ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
22081005 |
atctccctgcgatagcgcgcgacgtttcttgtctccaaaagagaccagaaatcatgaaagagttcagcagtatcaggtgtgataccatcaagcgccctca |
22081104 |
T |
|
| Q |
102 |
gtagtacatcgaagtacagagcggtcacagagccagcatccatagcattcttcagcaagcctttgacggtagggatacagggctcagggtctagcatgaa |
201 |
Q |
| |
|
| ||||| |||||||| |||||||||||||| ||||||||||| || ||||| || || |||||||||||||| || || |||||| || | ||| || |
|
|
| T |
22081105 |
gcagtacgtcgaagtagagagcggtcacagaaccagcatccatggcgttcttaagaaaacctttgacggtaggaatgcatggctcaatatccaacataaa |
22081204 |
T |
|
| Q |
202 |
ctgggtacacctcaaaatgcagaacat |
228 |
Q |
| |
|
|||||||| ||||||||||| ||||| |
|
|
| T |
22081205 |
ttgggtacatctcaaaatgcaaaacat |
22081231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 150
Target Start/End: Complemental strand, 22799846 - 22799785
Alignment:
| Q |
89 |
tcaagcgccctcagtagtacatcgaagtacagagcggtcacagagccagcatccatagcatt |
150 |
Q |
| |
|
|||||||||||||| | ||||| ||||| || ||| ||||||||||||||||||||||||| |
|
|
| T |
22799846 |
tcaagcgccctcagcatgacatcaaagtagagcgcgctcacagagccagcatccatagcatt |
22799785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 228
Target Start/End: Original strand, 74468 - 74694
Alignment:
| Q |
2 |
atctctctgcgatagcgcgcgaggtttcttgtctccaagagagaccagaaatcacaaaaaagggtagcagtatcaggtgtgataccgtcaagcgccctca |
101 |
Q |
| |
|
||||| |||||||||||||| | ||| | |||||||| |||||||| || ||| || || ||| ||||||||||||||||||||||| || |||| |
|
|
| T |
74468 |
atctccctgcgatagcgcgcaacatttttcgtctccaaaagagaccaaaactcattgaagagttcagcggtatcaggtgtgataccgtcaagtgctctca |
74567 |
T |
|
| Q |
102 |
gtagtacatcgaagtacagagcggtcacagagccagcatccatagcattcttcagcaagcctttgacggtagggatacagggctcagggtctagcatgaa |
201 |
Q |
| |
|
| |||||| ||||| |||||||||||||| |||||||||||||| ||||| ||||| ||||||||||| || || |||||| ||||||||||| |
|
|
| T |
74568 |
ccattacatcaaagtaaagagcggtcacagaaccagcatccatagcgttcttaagcaaatgcttgacggtaggaatgcatggctcaacatctagcatgaa |
74667 |
T |
|
| Q |
202 |
ctgggtacacctcaaaatgcagaacat |
228 |
Q |
| |
|
||||| || ||||||||||| ||||| |
|
|
| T |
74668 |
ttgggtgcatctcaaaatgcaaaacat |
74694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0108
Description:
Target: scaffold0108; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 2 - 174
Target Start/End: Original strand, 38944 - 39116
Alignment:
| Q |
2 |
atctctctgcgatagcgcgcgaggtttcttgtctccaagagagaccagaaatcacaaaaaagggtagcagtatcaggtgtgataccgtcaagcgccctca |
101 |
Q |
| |
|
||||| |||||||| ||||| | ||| | |||||||| |||||||| || ||| ||||| ||| |||||||| ||||||||||||||||| |||| |
|
|
| T |
38944 |
atctccctgcgataacgcgcaacatttttcgtctccaaaagagaccaaaagtcattgaaaagttcagcggtatcaggagtgataccgtcaagcgctctca |
39043 |
T |
|
| Q |
102 |
gtagtacatcgaagtacagagcggtcacagagccagcatccatagcattcttcagcaagcctttgacggtagg |
174 |
Q |
| |
|
| | |||||| ||||| |||||||||||||| |||||||||||||| ||| | ||||| | |||||||||||| |
|
|
| T |
39044 |
gcattacatcaaagtaaagagcggtcacagaaccagcatccatagcgttcctaagcaaacgtttgacggtagg |
39116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 2 - 174
Target Start/End: Complemental strand, 32794 - 32622
Alignment:
| Q |
2 |
atctctctgcgatagcgcgcgaggtttcttgtctccaagagagaccagaaatcacaaaaaagggtagcagtatcaggtgtgataccgtcaagcgccctca |
101 |
Q |
| |
|
||||| |||||||| ||||| | ||| | |||||||| |||||||| || ||| ||||| ||| |||||||| ||||||||||||||||| |||| |
|
|
| T |
32794 |
atctccctgcgataacgcgcaacatttttcgtctccaaaagagaccaaaagtcattgaaaagttcagcggtatcaggagtgataccgtcaagcgctctca |
32695 |
T |
|
| Q |
102 |
gtagtacatcgaagtacagagcggtcacagagccagcatccatagcattcttcagcaagcctttgacggtagg |
174 |
Q |
| |
|
| | |||||| ||||| |||||||||||||| |||||||||||||| ||| | ||||| | |||||||||||| |
|
|
| T |
32694 |
gcattacatcaaagtaaagagcggtcacagaaccagcatccatagcgttcctaagcaaacgtttgacggtagg |
32622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 13284448 - 13284332
Alignment:
| Q |
71 |
gtatcaggtgtgataccgtcaagcgccctcagtagtacatcgaagtacagagcggtcacagagccagcatccatagcattcttcagcaagcctttgacgg |
170 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| | |||||| ||||| |||||| ||||||||||||| |||||||| ||| | ||||| | ||||||| |
|
|
| T |
13284448 |
gtatcaggagtgataccgtcaagcgccctcagcattacatcaaagtaaagagcgctcacagagccagcgtccatagcgttcctaagcaaacgcttgacgg |
13284349 |
T |
|
| Q |
171 |
tagggatacagggctca |
187 |
Q |
| |
|
|||| || || |||||| |
|
|
| T |
13284348 |
taggaatgcatggctca |
13284332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 73 - 187
Target Start/End: Complemental strand, 14562304 - 14562190
Alignment:
| Q |
73 |
atcaggtgtgataccgtcaagcgccctcagtagtacatcgaagtacagagcggtcacagagccagcatccatagcattcttcagcaagcctttgacggta |
172 |
Q |
| |
|
|||||| ||||||||||||| ||||||||| | |||||| ||||| |||||| ||||||||||||| |||||||||||| | ||||| | ||||||||| |
|
|
| T |
14562304 |
atcaggagtgataccgtcaatcgccctcagcattacatcaaagtaaagagcgctcacagagccagcgtccatagcattcctaagcaaacgcttgacggta |
14562205 |
T |
|
| Q |
173 |
gggatacagggctca |
187 |
Q |
| |
|
|| || || |||||| |
|
|
| T |
14562204 |
ggaatgcatggctca |
14562190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 147
Target Start/End: Complemental strand, 14742018 - 14741960
Alignment:
| Q |
89 |
tcaagcgccctcagtagtacatcgaagtacagagcggtcacagagccagcatccatagc |
147 |
Q |
| |
|
|||||||||||||| | ||||| ||||| || ||| |||||||||||||||||||||| |
|
|
| T |
14742018 |
tcaagcgccctcagcatgacatcaaagtagagcgcgctcacagagccagcatccatagc |
14741960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0319 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: scaffold0319
Description:
Target: scaffold0319; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 73 - 187
Target Start/End: Original strand, 13668 - 13782
Alignment:
| Q |
73 |
atcaggtgtgataccgtcaagcgccctcagtagtacatcgaagtacagagcggtcacagagccagcatccatagcattcttcagcaagcctttgacggta |
172 |
Q |
| |
|
|||||| ||||||||||||| ||||||||| | |||||| ||||| |||||| ||||||||||||| |||||||||||| | ||||| | ||||||||| |
|
|
| T |
13668 |
atcaggagtgataccgtcaatcgccctcagcattacatcaaagtaaagagcgctcacagagccagcgtccatagcattcctaagcaaacgcttgacggta |
13767 |
T |
|
| Q |
173 |
gggatacagggctca |
187 |
Q |
| |
|
|| || || |||||| |
|
|
| T |
13768 |
ggaatgcatggctca |
13782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0319; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 73 - 150
Target Start/End: Original strand, 19507 - 19584
Alignment:
| Q |
73 |
atcaggtgtgataccgtcaagcgccctcagtagtacatcgaagtacagagcggtcacagagccagcatccatagcatt |
150 |
Q |
| |
|
|||||| ||||||||||||| |||| |||| | |||||| ||||| |||||| ||||||||||||| ||||||||||| |
|
|
| T |
19507 |
atcaggagtgataccgtcaatcgccatcagaattacatcaaagtaaagagcgctcacagagccagcgtccatagcatt |
19584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 71 - 229
Target Start/End: Original strand, 28722 - 28880
Alignment:
| Q |
71 |
gtatcaggtgtgataccgtcaagcgccctcagtagtacatcgaagtacagagcggtcacagagccagcatccatagcattcttcagcaagcctttgacgg |
170 |
Q |
| |
|
|||||| | ||||||||||||||||||||||| | |||||| ||||| |||||| | ||||||||||| |||||||| ||| | ||||| | ||||||| |
|
|
| T |
28722 |
gtatcatgagtgataccgtcaagcgccctcagcattacatcaaagtaaagagcgcttacagagccagcgtccatagcgttcctaagcaaacgcttgacgg |
28821 |
T |
|
| Q |
171 |
tagggatacagggctcagggtctagcatgaactgggtacacctcaaaatgcagaacatg |
229 |
Q |
| |
|
|||| || || |||||| ||||||||||| || || || |||||||| || |||||| |
|
|
| T |
28822 |
taggaatgcatggctcaacatctagcatgaattgagtgcatctcaaaatacaaaacatg |
28880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0304
Description:
Target: scaffold0304; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 151
Target Start/End: Complemental strand, 12425 - 12276
Alignment:
| Q |
2 |
atctctctgcgatagcgcgcgaggtttcttgtctccaagagagaccagaaatcacaaaaaagggtagcagtatcaggtgtgataccgtcaagcgccctca |
101 |
Q |
| |
|
||||| |||||||| ||||| | ||| |||||||||| |||||||| || ||| ||||| || |||||||| |||||| ||||||||||||||| |
|
|
| T |
12425 |
atctccctgcgataacgcgcaacattttttgtctccaaaagagaccaaaagtcattgaaaagttcagtggtatcaggagtgatatcgtcaagcgccctca |
12326 |
T |
|
| Q |
102 |
gtagtacatcgaagtacagagcggtcacagagccagcatccatagcattc |
151 |
Q |
| |
|
| | ||||| ||||| |||||| ||||||||||||| |||||||||||| |
|
|
| T |
12325 |
gcattacatgaaagtaaagagcgctcacagagccagcgtccatagcattc |
12276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 151
Target Start/End: Complemental strand, 18176 - 18027
Alignment:
| Q |
2 |
atctctctgcgatagcgcgcgaggtttcttgtctccaagagagaccagaaatcacaaaaaagggtagcagtatcaggtgtgataccgtcaagcgccctca |
101 |
Q |
| |
|
||||| |||||||| ||||| | ||| |||||||||| |||||||| || ||| ||||| || |||||||| |||||| ||||||||||||||| |
|
|
| T |
18176 |
atctccctgcgataacgcgcaacattttttgtctccaaaagagaccaaaagtcattgaaaagttcagtggtatcaggagtgatatcgtcaagcgccctca |
18077 |
T |
|
| Q |
102 |
gtagtacatcgaagtacagagcggtcacagagccagcatccatagcattc |
151 |
Q |
| |
|
| | ||||| ||||| |||||| ||||||||||||| |||||||||||| |
|
|
| T |
18076 |
gcattacatgaaagtaaagagcgctcacagagccagcgtccatagcattc |
18027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 72 - 187
Target Start/End: Original strand, 36088 - 36203
Alignment:
| Q |
72 |
tatcaggtgtgataccgtcaagcgccctcagtagtacatcgaagtacagagcggtcacagagccagcatccatagcattcttcagcaagcctttgacggt |
171 |
Q |
| |
|
||||||| ||||||||||||||||||||||| | |||||| ||||| |||||| | || || ||||| |||||||||||| | ||||| | |||||| || |
|
|
| T |
36088 |
tatcaggagtgataccgtcaagcgccctcagcattacatcaaagtaaagagcgtttacggaaccagcgtccatagcattcctaagcaaacgtttgacagt |
36187 |
T |
|
| Q |
172 |
agggatacagggctca |
187 |
Q |
| |
|
||| || || |||||| |
|
|
| T |
36188 |
aggaatgcatggctca |
36203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0897 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0897
Description:
Target: scaffold0897; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 158
Target Start/End: Complemental strand, 3988 - 3832
Alignment:
| Q |
2 |
atctctctgcgatagcgcgcgaggtttcttgtctccaagagagaccagaaatcacaaaaaagggtagcagtatcaggtgtgataccgtcaagcgccctca |
101 |
Q |
| |
|
||||| |||||||| ||||| | ||| |||||||||| |||||||| || ||| || || ||| |||||||| ||||| ||||| ||||| |||| |
|
|
| T |
3988 |
atctccctgcgataacgcgcaacattttttgtctccaaaagagaccaaaagtcattgaagagttcagcggtatcaggagtgatgccgtcgagcgctctca |
3889 |
T |
|
| Q |
102 |
gtagtacatcgaagtacagagcggtcacagagccagcatccatagcattcttcagca |
158 |
Q |
| |
|
| | |||||| ||||| |||||||||||||| ||||||||||| || ||||| |||| |
|
|
| T |
3888 |
gcattacatcaaagtaaagagcggtcacagaaccagcatccatggcgttcttaagca |
3832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0282 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0282
Description:
Target: scaffold0282; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 150
Target Start/End: Complemental strand, 2209 - 2148
Alignment:
| Q |
89 |
tcaagcgccctcagtagtacatcgaagtacagagcggtcacagagccagcatccatagcatt |
150 |
Q |
| |
|
|||||||||||||| | ||||| ||||| || || ||||||||||||||||||||||||| |
|
|
| T |
2209 |
tcaagcgccctcagcatgacatcaaagtagagcacgctcacagagccagcatccatagcatt |
2148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 121823 - 121759
Alignment:
| Q |
97 |
cctcagtagtacatcgaagtacagagcggtcacagagccagcatccatagcattcttcagcaagc |
161 |
Q |
| |
|
|||||| || ||||| || || || ||| |||||||||||||||||||||||||| | ||||||| |
|
|
| T |
121823 |
cctcagcaggacatcaaaatagagcgcgctcacagagccagcatccatagcattcctaagcaagc |
121759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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