View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7783_low_43 (Length: 230)
Name: NF7783_low_43
Description: NF7783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7783_low_43 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 43178135 - 43178346
Alignment:
| Q |
1 |
atcaaattccataaccataagccaaccttgactaaaatatgcctccaattagctgtattgagcatgatccgatatcactcatctgaattctgaaggtact |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
43178135 |
atcaaattccataaccataagccaaccttgactaaaatatgcctccaattacctgtattgagcatgatacgatatcactcatctgaattctgaaggtact |
43178234 |
T |
|
| Q |
101 |
aaaatcatacatattcaatgaggtgattcatcaccagaattttaatgcaatatcaaaatccagaatcgcatcacaagcccaattttgaccaaataaatac |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43178235 |
aaaatcttacatattcaatgaggtgattcatcaccagaattttaatgcaatgtcaaaatccagaatcgcatcacaagcccaattttgaccaaataaatac |
43178334 |
T |
|
| Q |
201 |
cttgaacatgat |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
43178335 |
cttgaacatgat |
43178346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 2 - 212
Target Start/End: Original strand, 43172076 - 43172283
Alignment:
| Q |
2 |
tcaaattccataaccataagccaaccttgactaaaatatgcctccaattagctgtattgagcatgatccgatatcactcatctgaattctgaaggtacta |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||| |||| || |||||| |
|
|
| T |
43172076 |
tcaaattccataaccataagccaaccttgactaaaatatgcctccaattacatgtattgagcatcataagatatcactaatctaaaa-------gtacta |
43172168 |
T |
|
| Q |
102 |
aaatcatacatattcaatgaggtgatt----catcaccagaattttaatgcaatatcaaaatccagaatcgcatcacaagcccaattttgaccaaataaa |
197 |
Q |
| |
|
|||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||| |||||||| |
|
|
| T |
43172169 |
aaatcataaatattcaatgaggtgattatcacctcaccagaattttaatgcaatatcaaaatccagaatcacatcacaagcctaatcttgatcaaataaa |
43172268 |
T |
|
| Q |
198 |
taccttgaacatgat |
212 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
43172269 |
tatcttgaacatgat |
43172283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 36644160 - 36644089
Alignment:
| Q |
96 |
gtactaaaatcatacatattcaatgaggtgattcatcaccagaattttaatgcaatatcaaaatccagaatc |
167 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||| |||| |
|
|
| T |
36644160 |
gtactaaagtcatacatattcaatgaggtgattcatccccatagttttaatgcaatatcaaaatccacaatc |
36644089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 167
Target Start/End: Original strand, 36849625 - 36849695
Alignment:
| Q |
97 |
tactaaaatcatacatattcaatgaggtgattcatcaccagaattttaatgcaatatcaaaatccagaatc |
167 |
Q |
| |
|
||||||| |||||||||||||| ||||| |||| |||||||||| ||||| ||||||||||||||| |||| |
|
|
| T |
36849625 |
tactaaattcatacatattcaaagaggtaattcttcaccagaatattaatacaatatcaaaatccacaatc |
36849695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University