View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7783_low_45 (Length: 221)
Name: NF7783_low_45
Description: NF7783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7783_low_45 |
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Alignment Details
Target: chr7 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 49168723 - 49168595
Alignment:
| Q |
1 |
acgaatggaagggagagtgtcgtttccatcactgtcgccagaaaagaagtgcgccgtcgtcgtcggcgatgtggccagtgatggtatctggtgagagaga |
100 |
Q |
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| T |
49168723 |
acgaaaggaagggagagtgtcgtttccatcatcgtcgccggaaaagaagtgcgccgtcggcggcggtggtgtggccggtgatggtatctggtgagggaga |
49168624 |
T |
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| Q |
101 |
aaggagaaacggggttgaaggaagagaga |
129 |
Q |
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| T |
49168623 |
aaggagaaacggggttgaaggaagagaga |
49168595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 10622688 - 10622818
Alignment:
| Q |
1 |
acgaatggaagggagagtgtcgtttccatcactgtcgccagaaaagaagtgcgccgtcgtcgtcggcgatgtggccagtgatggtatctggtgagagaga |
100 |
Q |
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||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||| || | ||||||| |||||||||||| |||| |||| |
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| T |
10622688 |
acgaaaggaagggagagtgtcgtttccatcaccgtcgccggaaaagaagtgcgccgtcgtcggtggtggtgtggccggtgatggtatctaatgagggaga |
10622787 |
T |
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| Q |
101 |
aaggagaaacggggttgaaggaagagagaga |
131 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
10622788 |
aaggagaaacggggttgaaggaagagagaga |
10622818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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