View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7783_low_47 (Length: 215)

Name: NF7783_low_47
Description: NF7783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7783_low_47
NF7783_low_47
[»] chr5 (4 HSPs)
chr5 (16-195)||(8938745-8938924)
chr5 (88-161)||(22903000-22903073)
chr5 (100-161)||(20025202-20025263)
chr5 (85-196)||(27083315-27083424)
[»] chr2 (3 HSPs)
chr2 (99-196)||(45714913-45715008)
chr2 (100-188)||(19919152-19919238)
chr2 (100-195)||(45258231-45258324)
[»] chr1 (4 HSPs)
chr1 (100-196)||(5459786-5459880)
chr1 (100-196)||(33101585-33101679)
chr1 (89-141)||(23280412-23280464)
chr1 (146-193)||(48637515-48637561)
[»] chr4 (5 HSPs)
chr4 (97-163)||(40979169-40979235)
chr4 (98-196)||(3981867-3981963)
chr4 (97-161)||(19818610-19818674)
chr4 (100-161)||(19809621-19809682)
chr4 (87-119)||(10981772-10981804)
[»] chr7 (1 HSPs)
chr7 (86-196)||(29373351-29373459)
[»] scaffold0505 (1 HSPs)
scaffold0505 (100-196)||(7804-7898)
[»] chr8 (4 HSPs)
chr8 (100-196)||(15057955-15058048)
chr8 (100-180)||(23269165-23269243)
chr8 (100-196)||(26916976-26917070)
chr8 (103-159)||(23497248-23497304)
[»] chr3 (2 HSPs)
chr3 (86-163)||(2311943-2312020)
chr3 (97-134)||(28715621-28715658)
[»] chr6 (4 HSPs)
chr6 (86-134)||(690016-690064)
chr6 (100-136)||(14080382-14080418)
chr6 (100-136)||(20148215-20148251)
chr6 (100-136)||(22184577-22184613)


Alignment Details
Target: chr5 (Bit Score: 156; Significance: 5e-83; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 8938745 - 8938924
Alignment:
Q  16 aatatcacaagatcttatgacattagataaactcaaacgagtcaatccaaacaggatcttaatgtttgttattgatctgttcgatgaggatggatgagag 115  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8938745 aatatcacaagatcttatgacattagataaactcaaacgaatcaatccaaacaggatcttaatgtttgttattgatatgttcgatgaggatggatgagag 8938844  T
Q  116 gcaatggtggcggaaagtgctatggtacgttggcgatgagtcttcgtgcggtagaacaaaaggtgcatgcaggcacgtta 195  Q
    ||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  8938845 gcaatggtggcggaaagtgctctggtacggtggcgatgagtctttgtgcggtagaacgaaaggtgcatgcaggcacgtta 8938924  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 161
Target Start/End: Original strand, 22903000 - 22903073
Alignment:
Q  88 tgatctgttcgatgaggatggatgagaggcaatggtggcggaaagtgctatggtacgttggcgatgagtcttcg 161  Q
    |||||||| ||||||||||||||||||||||| | ||||||||||||||   ||||| ||| ||||||| ||||    
T  22903000 tgatctgtccgatgaggatggatgagaggcaacgttggcggaaagtgcttcagtacggtggtgatgagttttcg 22903073  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 161
Target Start/End: Original strand, 20025202 - 20025263
Alignment:
Q  100 tgaggatggatgagaggcaatggtggcggaaagtgctatggtacgttggcgatgagtcttcg 161  Q
    ||||||||||||||||||| | ||||||||| ||||| ||||||| || | |||||||||||    
T  20025202 tgaggatggatgagaggcactagtggcggaatgtgctttggtacggtgtcaatgagtcttcg 20025263  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 196
Target Start/End: Complemental strand, 27083424 - 27083315
Alignment:
Q  85 tattgatctgttcgatgaggatggatgagaggcaatggtggcggaaagtgctatggtacgttggcgatgagtcttcgtgcggtagaacaaaaggtgcatg 184  Q
    ||||||||||| || ||||||| |||||||  ||| |||||||||| ||||| |  |||  |||||| ||||||||  |||||||||| ||| |||  ||    
T  27083424 tattgatctgtccggtgaggattgatgagaaacaacggtggcggaatgtgctctattacagtggcgaagagtcttc--gcggtagaacgaaatgtgtctg 27083327  T
Q  185 caggcacgttag 196  Q
    ||| ||||||||    
T  27083326 cagacacgttag 27083315  T

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Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 99 - 196
Target Start/End: Original strand, 45714913 - 45715008
Alignment:
Q  99 atgaggatggatgagaggcaatggtggcggaaagtgctatggtacgttggcgatgagtcttcgtgcggtagaacaaaaggtgcatgcaggcacgttag 196  Q
    ||||||||||||||| |||||   ||||||||||||||  ||||| |||||||||||||||| |  ||| |||| |||||||||||||||||||||||    
T  45714913 atgaggatggatgagtggcaacaatggcggaaagtgctccggtacattggcgatgagtcttcct--ggtggaacgaaaggtgcatgcaggcacgttag 45715008  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 188
Target Start/End: Complemental strand, 19919238 - 19919152
Alignment:
Q  100 tgaggatggatgagaggcaatggtggcggaaagtgctatggtacgttggcgatgagtcttcgtgcggtagaacaaaaggtgcatgcagg 188  Q
    |||| |||||||||||||||||||||| |||||||||  |||| | ||||||| |||||||||  ||| |||| |||||||| ||||||    
T  19919238 tgagaatggatgagaggcaatggtggcagaaagtgctccggtatggtggcgatcagtcttcgt--ggtggaacgaaaggtgcctgcagg 19919152  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 195
Target Start/End: Complemental strand, 45258324 - 45258231
Alignment:
Q  100 tgaggatggatgagaggcaatggtggcggaaagtgctatggtacgttggcgatgagtcttcgtgcggtagaacaaaaggtgcatgcaggcacgtta 195  Q
    |||||||||||||||||||| ||||  ||||| |||| || || | |||||||||||||||  ||||| |||| |||| ||  |||||||||||||    
T  45258324 tgaggatggatgagaggcaacggtgatggaaaatgctttgatatggtggcgatgagtcttc--gcggtggaacgaaagatgtctgcaggcacgtta 45258231  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 100 - 196
Target Start/End: Complemental strand, 5459880 - 5459786
Alignment:
Q  100 tgaggatggatgagaggcaatggtggcggaaagtgctatggtacgttggcgatgagtcttcgtgcggtagaacaaaaggtgcatgcaggcacgttag 196  Q
    |||||||||||||||||| | | |||||||| ||||| ||||||| |||||||||||||||||  ||| | || ||||||||||||||| |||||||    
T  5459880 tgaggatggatgagaggcgacgatggcggaatgtgctctggtacggtggcgatgagtcttcgt--ggtgggacgaaaggtgcatgcaggtacgttag 5459786  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 196
Target Start/End: Complemental strand, 33101679 - 33101585
Alignment:
Q  100 tgaggatggatgagaggcaatggtggcggaaagtgctatggtacgttggcgatgagtcttcgtgcggtagaacaaaaggtgcatgcaggcacgttag 196  Q
    ||||||||||||||||||||   |||||||||||| |  |||||  ||  ||||||||||||  | ||||||  |||||||||||||||||||||||    
T  33101679 tgaggatggatgagaggcaacactggcggaaagtgtttcggtacagtgttgatgagtcttcg--ctgtagaatgaaaggtgcatgcaggcacgttag 33101585  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 141
Target Start/End: Complemental strand, 23280464 - 23280412
Alignment:
Q  89 gatctgttcgatgaggatggatgagaggcaatggtggcggaaagtgctatggt 141  Q
    |||||||||| |||||||| ||||| ||||| |||||||||||||||| ||||    
T  23280464 gatctgttcggtgaggatgaatgagtggcaacggtggcggaaagtgctctggt 23280412  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 193
Target Start/End: Original strand, 48637515 - 48637561
Alignment:
Q  146 tggcgatgagtcttcgtgcggtagaacaaaaggtgcatgcaggcacgt 193  Q
    ||||||||||||||| ||||||||||| |||||||| |||||||||||    
T  48637515 tggcgatgagtcttc-tgcggtagaacgaaaggtgcctgcaggcacgt 48637561  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 97 - 163
Target Start/End: Complemental strand, 40979235 - 40979169
Alignment:
Q  97 cgatgaggatggatgagaggcaatggtggcggaaagtgctatggtacgttggcgatgagtcttcgtg 163  Q
    ||||||||||||||||||||||||||| | |||||||||| ||||| | ||| ||||||||| ||||    
T  40979235 cgatgaggatggatgagaggcaatggtagtggaaagtgctctggtatggtggtgatgagtctccgtg 40979169  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 196
Target Start/End: Original strand, 3981867 - 3981963
Alignment:
Q  98 gatgaggatggatgagaggcaatggtggcggaaagtgctatggtacgttggcgatgagtcttcgtgcggtagaacaaaaggtgcatgcaggcacgttag 196  Q
    |||||||||||||||||||||| ||||||||||| || |  |||||  ||  |||||||||||   |||| |||| ||||||||||||| |||||||||    
T  3981867 gatgaggatggatgagaggcaacggtggcggaaaatgttccggtacagtgaggatgagtcttc--acggtggaacgaaaggtgcatgcatgcacgttag 3981963  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 19818610 - 19818674
Alignment:
Q  97 cgatgaggatggatgagaggcaatggtggcggaaagtgctatggtacgttggcgatgagtcttcg 161  Q
    |||||||||||||| | |||||| ||||| |||| ||||| ||||||| || |||||||||||||    
T  19818610 cgatgaggatggataaaaggcaacggtggtggaatgtgctctggtacggtgacgatgagtcttcg 19818674  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 161
Target Start/End: Original strand, 19809621 - 19809682
Alignment:
Q  100 tgaggatggatgagaggcaatggtggcggaaagtgctatggtacgttggcgatgagtcttcg 161  Q
    ||||||||||| | |||||| ||||| |||| ||||| ||||||| || |||||||||||||    
T  19809621 tgaggatggataaaaggcaacggtggtggaatgtgctctggtacggtgacgatgagtcttcg 19809682  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 119
Target Start/End: Original strand, 10981772 - 10981804
Alignment:
Q  87 ttgatctgttcgatgaggatggatgagaggcaa 119  Q
    ||||||||| |||||||||||||||||||||||    
T  10981772 ttgatctgtccgatgaggatggatgagaggcaa 10981804  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 196
Target Start/End: Original strand, 29373351 - 29373459
Alignment:
Q  86 attgatctgttcgatgaggatggatgagaggcaatggtggcggaaagtgctatggtacgttggcgatgagtcttcgtgcggtagaacaaaaggtgcatgc 185  Q
    |||||||||| |  ||||||| ||||||||||||| |||| ||||| || | ||||||| ||| ||||||| ||  ||||||  ||| ||||||||||||    
T  29373351 attgatctgtccagtgaggatagatgagaggcaatagtggtggaaaatgttctggtacggtggtgatgagtttt--tgcggtgaaacgaaaggtgcatgc 29373448  T
Q  186 aggcacgttag 196  Q
    ||||| |||||    
T  29373449 aggcatgttag 29373459  T

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Target: scaffold0505 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 196
Target Start/End: Original strand, 7804 - 7898
Alignment:
Q  100 tgaggatggatgagaggcaatggtggcggaaagtgctatggtacgttggcgatgagtcttcgtgcggtagaacaaaaggtgcatgcaggcacgttag 196  Q
    ||||||||||||||||||||  |||||| ||||| || |  |||| |||||||||||||||   |||| |||  ||||||||||| |||||||||||    
T  7804 tgaggatggatgagaggcaaaagtggcgaaaagtactctattacggtggcgatgagtcttc--acggtggaaggaaaggtgcatgtaggcacgttag 7898  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 196
Target Start/End: Original strand, 15057955 - 15058048
Alignment:
Q  100 tgaggatggatgagaggcaatggtggcggaaagtgctatggtacgttggcgatgagtcttcgtgcggtagaacaaaaggtgcatgcaggcacgttag 196  Q
    ||||||||||||||||||||  ||| ||||||||| |   ||||| || ||||||||||| |||  || |||| |||||||||||||||||||||||    
T  15057955 tgaggatggatgagaggcaacagtgacggaaagtg-tccagtacggtgacgatgagtctttgtg--gtggaacgaaaggtgcatgcaggcacgttag 15058048  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 180
Target Start/End: Original strand, 23269165 - 23269243
Alignment:
Q  100 tgaggatggatgagaggcaatggtggcggaaagtgctatggtacgttggcgatgagtcttcgtgcggtagaacaaaaggtg 180  Q
    |||| |||||| ||||||||| || ||||||| |||| ||||||| ||||||||||||||  |||||| |||| |||||||    
T  23269165 tgagtatggataagaggcaatagttgcggaaaatgctctggtacggtggcgatgagtctt--tgcggtggaacgaaaggtg 23269243  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 196
Target Start/End: Complemental strand, 26917070 - 26916976
Alignment:
Q  100 tgaggatggatgagaggcaatggtggcggaaagtgctatggtacgttggcgatgagtcttcgtgcggtagaacaaaaggtgcatgcaggcacgttag 196  Q
    |||||||||||||||||||| |||||| ||||| ||| | ||||  |||||| ||||||||||  | | |||| ||||||||||  |||||||||||    
T  26917070 tgaggatggatgagaggcaacggtggcagaaagggctctagtacagtggcgacgagtcttcgt--gatggaacgaaaggtgcatttaggcacgttag 26916976  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 23497304 - 23497248
Alignment:
Q  103 ggatggatgagaggcaatggtggcggaaagtgctatggtacgttggcgatgagtctt 159  Q
    |||||||||||||||||  |||||||||| | ||  |||||| ||||||||||||||    
T  23497304 ggatggatgagaggcaacagtggcggaaaatactcaggtacggtggcgatgagtctt 23497248  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 163
Target Start/End: Complemental strand, 2312020 - 2311943
Alignment:
Q  86 attgatctgttcgatgaggatggatgagaggcaatggtggcggaaagtgctatggtacgttggcgatgagtcttcgtg 163  Q
    |||||| ||| || |||| |||||||||||||||  |||||| ||||||||  |||||| |||||| |||||||||||    
T  2312020 attgatatgtccggtgagtatggatgagaggcaacagtggcgcaaagtgctccggtacggtggcgaagagtcttcgtg 2311943  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 97 - 134
Target Start/End: Complemental strand, 28715658 - 28715621
Alignment:
Q  97 cgatgaggatggatgagaggcaatggtggcggaaagtg 134  Q
    |||||||||||||||||||||||  |||||||||||||    
T  28715658 cgatgaggatggatgagaggcaaaagtggcggaaagtg 28715621  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 690064 - 690016
Alignment:
Q  86 attgatctgttcgatgaggatggatgagaggcaatggtggcggaaagtg 134  Q
    ||||||||||||| |||||||||||||| || ||||||||  |||||||    
T  690064 attgatctgttcggtgaggatggatgagtggtaatggtggtagaaagtg 690016  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 136
Target Start/End: Original strand, 14080382 - 14080418
Alignment:
Q  100 tgaggatggatgagaggcaatggtggcggaaagtgct 136  Q
    |||||||||||||| | ||||||||||||||||||||    
T  14080382 tgaggatggatgagtgacaatggtggcggaaagtgct 14080418  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 136
Target Start/End: Original strand, 20148215 - 20148251
Alignment:
Q  100 tgaggatggatgagaggcaatggtggcggaaagtgct 136  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  20148215 tgaggatggatgagtggcaatgatggcggaaagtgct 20148251  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 136
Target Start/End: Complemental strand, 22184613 - 22184577
Alignment:
Q  100 tgaggatggatgagaggcaatggtggcggaaagtgct 136  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  22184613 tgaggatggatgagtggcaatgatggcggaaagtgct 22184577  T

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