View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7783_low_48 (Length: 212)
Name: NF7783_low_48
Description: NF7783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7783_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 7e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 20746860 - 20746694
Alignment:
| Q |
17 |
aaaatttgatgtaaataaatgaaaatggtaagctattacaacccaaaaagatcacccctacgtactgatgaaatcacagcaacaaaaaatggtgacagca |
116 |
Q |
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| T |
20746860 |
aaaatttgatgtaaataaatgaaaatggtaagctattacaacccaaaaagatcacccctacgtactgatgaaatcacagcaacaaaaaatggtgacagca |
20746761 |
T |
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| Q |
117 |
ggaaaataatagcccagcatacaagagggaaaaacagcaagaaagtctaaaaactgctatacacaga |
183 |
Q |
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| T |
20746760 |
ggaaaataatagcccagcatacaagagggaaaaacaacaagaaagcctaaaaactgctatacacaga |
20746694 |
T |
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Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 25815775 - 25815610
Alignment:
| Q |
18 |
aaatttgatgtaaataaatgaaaatggtaagctattacaacccaaaaagatcacccctacgtactgatgaaatcacagcaacaaaaaatggtgacagcag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
25815775 |
aaatttgatgtaaataaatgaaaatggtaagctattacaacccaaaaagatcacccctgcgtactgatgaaaacacagcaacaaaaaatggtgacaacag |
25815676 |
T |
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| Q |
118 |
gaaaataatagcccagcatacaagagggaaaaacagcaagaaagtctaaaaactgctatacacaga |
183 |
Q |
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||||||||||||||| ||||||||||||||||||| |||||||| ||||||||| ||||||||||| |
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| T |
25815675 |
gaaaataatagcccaacatacaagagggaaaaacaacaagaaagcctaaaaactactatacacaga |
25815610 |
T |
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