View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7783_low_49 (Length: 205)

Name: NF7783_low_49
Description: NF7783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7783_low_49
NF7783_low_49
[»] chr5 (2 HSPs)
chr5 (1-98)||(5254496-5254589)
chr5 (157-205)||(5254644-5254692)
[»] chr1 (5 HSPs)
chr1 (1-123)||(20133868-20133985)
chr1 (157-205)||(24523725-24523773)
chr1 (157-205)||(20133790-20133838)
chr1 (162-205)||(20142167-20142209)
chr1 (1-33)||(24523869-24523901)
[»] chr8 (2 HSPs)
chr8 (1-123)||(6647877-6647995)
chr8 (157-205)||(6648025-6648073)
[»] chr7 (7 HSPs)
chr7 (1-98)||(4469734-4469827)
chr7 (157-205)||(4469632-4469680)
chr7 (157-205)||(39669603-39669651)
chr7 (157-201)||(4468349-4468393)
chr7 (162-205)||(38690954-38690997)
chr7 (1-98)||(38691057-38691148)
chr7 (1-33)||(39669474-39669506)
[»] chr6 (2 HSPs)
chr6 (157-205)||(11144109-11144157)
chr6 (1-98)||(11144219-11144312)
[»] scaffold0136 (2 HSPs)
scaffold0136 (157-205)||(40747-40795)
scaffold0136 (1-33)||(40888-40920)
[»] chr2 (2 HSPs)
chr2 (1-98)||(13859606-13859699)
chr2 (157-205)||(13859754-13859802)
[»] chr4 (1 HSPs)
chr4 (157-202)||(3993331-3993376)
[»] scaffold0416 (1 HSPs)
scaffold0416 (157-205)||(4371-4419)
[»] chr3 (2 HSPs)
chr3 (157-205)||(7551530-7551578)
chr3 (1-98)||(7551381-7551472)


Alignment Details
Target: chr5 (Bit Score: 55; Significance: 8e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 5254496 - 5254589
Alignment:
Q  1 cataaagtggcacatatgtagacagagttagtttggttacaaaagacaaacgttagatggggtttt-tcttttctttggtggtacaaatttaaagagaa 98  Q
    |||||||||||||||||||||||||||||||||     || |||||||||||||||||| |||||| ||||||||||||||| |||||||||| |||||    
T  5254496 cataaagtggcacatatgtagacagagttagtt-----accaaagacaaacgttagatgaggttttttcttttctttggtggcacaaatttaatgagaa 5254589  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 205
Target Start/End: Original strand, 5254644 - 5254692
Alignment:
Q  157 atatggggatcggtgtttatattgccaaataaatagagaaaatagcact 205  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||    
T  5254644 atatggggatcgttgtttatattaccaaataaatagagaaaatagcact 5254692  T

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Target: chr1 (Bit Score: 55; Significance: 8e-23; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 20133985 - 20133868
Alignment:
Q  1 cataaagtggcacatatgtagacagagttagtttggttacaaaagacaaacgttagatggggtttttcttttctttggtggtacaaatttaaagagaann 100  Q
    |||||||||||||| ||||||||||||||||||     || |||||||||||||||||| ||||||| ||||||||||||| |||||||||| |||||      
T  20133985 cataaagtggcacagatgtagacagagttagtt-----accaaagacaaacgttagatgaggttttttttttctttggtggcacaaatttaatgagaaat 20133891  T
Q  101 nnnnnnagcaaaagtttgtttag 123  Q
          |||||||||||||||||    
T  20133890 ttttttagcaaaagtttgtttag 20133868  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 24523773 - 24523725
Alignment:
Q  157 atatggggatcggtgtttatattgccaaataaatagagaaaatagcact 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24523773 atatggggatcggtgtttatattgccaaataaatagagaaaatagcact 24523725  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 20133838 - 20133790
Alignment:
Q  157 atatggggatcggtgtttatattgccaaataaatagagaaaatagcact 205  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  20133838 atatggggatcggtgattatatttccaaataaatagagaaaatagcact 20133790  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 20142209 - 20142167
Alignment:
Q  162 gggatcggtgtttatattgccaaataaatagagaaaatagcact 205  Q
    |||||| ||||||||||||||||||||||||| |||||||||||    
T  20142209 gggatccgtgtttatattgccaaataaataga-aaaatagcact 20142167  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 24523901 - 24523869
Alignment:
Q  1 cataaagtggcacatatgtagacagagttagtt 33  Q
    |||||| ||||||||||||||||||||||||||    
T  24523901 cataaaatggcacatatgtagacagagttagtt 24523869  T

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Target: chr8 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 6647877 - 6647995
Alignment:
Q  1 cataaagtggcacatatgtagacagagttagtttggttacaaaagacaaacgttagatggggtttt-tcttttctttggtggtacaaatttaaagagaan 99  Q
    |||||||||||||||||||||||||||||||||     || ||||||||||||||||||  ||||| ||||||||||||||| |||||||||| |||||     
T  6647877 cataaagtggcacatatgtagacagagttagtt-----accaaagacaaacgttagatgatgttttttcttttctttggtggcacaaatttaatgagaat 6647971  T
Q  100 nnnnnnnagcaaaagtttgtttag 123  Q
           |||||||||||||||||    
T  6647972 tttttttagcaaaagtttgtttag 6647995  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 157 - 205
Target Start/End: Original strand, 6648025 - 6648073
Alignment:
Q  157 atatggggatcggtgtttatattgccaaataaatagagaaaatagcact 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6648025 atatggggatcggtgtttatattgccaaataaatagagaaaatagcact 6648073  T

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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 4469827 - 4469734
Alignment:
Q  1 cataaagtggcacatatgtagacagagttagtttggttacaaaagacaaacgttagatggggttttt-cttttctttggtggtacaaatttaaagagaa 98  Q
    |||||||||||||||||||||||| ||||||||     || |||||||||||||||||| ||||||| |||||||||||||| |||||||||| |||||    
T  4469827 cataaagtggcacatatgtagacatagttagtt-----accaaagacaaacgttagatgaggttttttcttttctttggtggcacaaatttaatgagaa 4469734  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 4469680 - 4469632
Alignment:
Q  157 atatggggatcggtgtttatattgccaaataaatagagaaaatagcact 205  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4469680 atatggggttcggtgtttatattgccaaataaatagagaaaatagcact 4469632  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 157 - 205
Target Start/End: Original strand, 39669603 - 39669651
Alignment:
Q  157 atatggggatcggtgtttatattgccaaataaatagagaaaatagcact 205  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  39669603 atatggggatcggtgtttatattgccaaataaatagaaaaaatagcact 39669651  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 4468393 - 4468349
Alignment:
Q  157 atatggggatcggtgtttatattgccaaataaatagagaaaatag 201  Q
    |||||||||| | ||||||||||||||||||||||||||||||||    
T  4468393 atatggggattgatgtttatattgccaaataaatagagaaaatag 4468349  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 38690997 - 38690954
Alignment:
Q  162 gggatcggtgtttatattgccaaataaatagagaaaatagcact 205  Q
    |||||||||| |||||||||||||||||||||||||||| ||||    
T  38690997 gggatcggtggttatattgccaaataaatagagaaaataacact 38690954  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 38691148 - 38691057
Alignment:
Q  1 cataaagtggcacatatgtagacagagttagtttggttacaaaagacaaacgttagatggggtttttcttttctttggtggtacaaatttaaagagaa 98  Q
    ||||||||| |||| ||||||||||||||| ||     || ||||||||||||||||| | |||||| ||||||||| ||| |||||||||| |||||    
T  38691148 cataaagtgacacagatgtagacagagttaatt-----accaaagacaaacgttagat-gagttttttttttctttgttggcacaaatttaatgagaa 38691057  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 39669474 - 39669506
Alignment:
Q  1 cataaagtggcacatatgtagacagagttagtt 33  Q
    |||||||||||||||||||||||||||||||||    
T  39669474 cataaagtggcacatatgtagacagagttagtt 39669506  T

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Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 11144157 - 11144109
Alignment:
Q  157 atatggggatcggtgtttatattgccaaataaatagagaaaatagcact 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11144157 atatggggatcggtgtttatattgccaaataaatagagaaaatagcact 11144109  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 11144312 - 11144219
Alignment:
Q  1 cataaagtggcacatatgtagacagagttagtttggttacaaaagacaaacgttagatggggttttt-cttttctttggtggtacaaatttaaagagaa 98  Q
    |||||||||||||||||||||||||||||||||     || |||||||||||||||||| | ||||| ||||||||| |||||| |||||||| |||||    
T  11144312 cataaagtggcacatatgtagacagagttagtt-----accaaagacaaacgttagatgagattttttcttttctttagtggtataaatttaatgagaa 11144219  T

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Target: scaffold0136 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 40795 - 40747
Alignment:
Q  157 atatggggatcggtgtttatattgccaaataaatagagaaaatagcact 205  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  40795 atatgaggatcggtgtttatattgccaaataaatagagaaaatagcact 40747  T

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Target: scaffold0136; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 40920 - 40888
Alignment:
Q  1 cataaagtggcacatatgtagacagagttagtt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  40920 cataaagtggcacatatgtagacaaagttagtt 40888  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 13859606 - 13859699
Alignment:
Q  1 cataaagtggcacatatgtagacagagttagtttggttacaaaagacaaacgttagatggggtttt-tcttttctttggtggtacaaatttaaagagaa 98  Q
    ||||||||||||||||| |||||||||||||||     |  |||||||||||||| ||| |||||| ||||||||||||||| |||||||||| |||||    
T  13859606 cataaagtggcacatatatagacagagttagtt-----atcaaagacaaacgttatatgaggttttttcttttctttggtggcacaaatttaatgagaa 13859699  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 205
Target Start/End: Original strand, 13859754 - 13859802
Alignment:
Q  157 atatggggatcggtgtttatattgccaaataaatagagaaaatagcact 205  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  13859754 atatggggatcagtgtttatattgccaaataaatatagaaaatagcact 13859802  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 157 - 202
Target Start/End: Complemental strand, 3993376 - 3993331
Alignment:
Q  157 atatggggatcggtgtttatattgccaaataaatagagaaaatagc 202  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  3993376 atatggggatcggtgtttatattgctaaataaatagagaaaatagc 3993331  T

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Target: scaffold0416 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0416
Description:

Target: scaffold0416; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 4419 - 4371
Alignment:
Q  157 atatggggatcggtgtttatattgccaaataaatagagaaaatagcact 205  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  4419 atatggggatcggtggttatattgccaaataaatagagaaaataacact 4371  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 205
Target Start/End: Original strand, 7551530 - 7551578
Alignment:
Q  157 atatggggatcggtgtttatattgccaaataaatagagaaaatagcact 205  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  7551530 atatggggatcggtggttatattgccaaataaatagagaaaataacact 7551578  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 7551381 - 7551472
Alignment:
Q  1 cataaagtggcacatatgtagacagagttagtttggttacaaaagacaaacgttagatggggtttttcttttctttggtggtacaaatttaaagagaa 98  Q
    ||||||||| |||| ||||||||||||||||||     || ||||||||||||||||||   ||||| ||||||||| ||| |||||||||| |||||    
T  7551381 cataaagtgacacagatgtagacagagttagtt-----accaaagacaaacgttagatgatattttt-ttttctttgttggcacaaatttaatgagaa 7551472  T

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