View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7783_low_5 (Length: 512)

Name: NF7783_low_5
Description: NF7783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7783_low_5
NF7783_low_5
[»] chr7 (8 HSPs)
chr7 (16-509)||(1874791-1875284)
chr7 (267-502)||(1883780-1884009)
chr7 (41-194)||(1885363-1885515)
chr7 (188-271)||(1884150-1884232)
chr7 (431-508)||(24840404-24840482)
chr7 (435-512)||(1220200-1220275)
chr7 (457-508)||(13885937-13885989)
chr7 (429-509)||(8916130-8916211)
[»] chr2 (4 HSPs)
chr2 (172-271)||(3417815-3417914)
chr2 (286-365)||(3417467-3417546)
chr2 (429-493)||(32162848-32162913)
chr2 (429-473)||(28738175-28738219)
[»] chr5 (2 HSPs)
chr5 (427-508)||(9868153-9868235)
chr5 (429-508)||(21848722-21848799)
[»] chr1 (3 HSPs)
chr1 (429-508)||(8967555-8967634)
chr1 (431-505)||(9198996-9199071)
chr1 (476-509)||(23987845-23987878)
[»] chr8 (1 HSPs)
chr8 (432-505)||(24578537-24578611)
[»] chr4 (1 HSPs)
chr4 (429-509)||(7634335-7634416)


Alignment Details
Target: chr7 (Bit Score: 461; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 16 - 509
Target Start/End: Complemental strand, 1875284 - 1874791
Alignment:
Q  16 gacatcaggtggttccgacggcggtcgatactcgctaaagttaaacgtcatgagaggattttcatttagagaaccttgatcattatcnnnnnnntccaat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||    
T  1875284 gacatcaggtggttccgacggcggtcgatactcgctaaagttaaacgtcatgagaggattttcatttagagaaccttgatcattatcaaaaaaatccaat 1875185  T
Q  116 ggtaaggcgctatgtagtggaaattgaaagagaaggtatagctgtttggccatcaccatattcttctgatcctttcttattatgagacttatctttttta 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1875184 ggtaaggcgctatgtagtggaaattgaaagagaaggtatagctgtttggccatcaccatattcttctgatcctttcttattatgagacttatctttttta 1875085  T
Q  216 gtggctcgtagttttttattcactcctatgtttgaagtccaatgcatattattttgttttctacaaatgcatgcattttcgtcgactgaaggattactat 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  1875084 gtggctcgtagttttttattcactcctatgtttgaagtccaatgcatattattttgttttctacaaatgcatgcattttcgtcgatagaaggattactat 1874985  T
Q  316 ccgtagagctattaatcttgttgttctggtcatgggcagttatgtcattcacctgtgatttcgtcgtgttgtccctatcaaacaacaatgaatcaatgga 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1874984 ccgtagagctattaatcttgttgttctggtcatgggcagttatgtcattcacctgtgatttcgtcgtgttgtccctatcaaacaacaatgaatcaatgga 1874885  T
Q  416 caatatagtagagtcaataatttgattgtttctaccacgtggaaccctaattggtccacatctctgttctgattgtttatgttgttgttgttgt 509  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1874884 caatatagtagagtcaataatttgattgtttctaccacgtggaagcctaattggtccacatctctgttctgattgtttatgttgttgttgttgt 1874791  T

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Target: chr7; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 267 - 502
Target Start/End: Complemental strand, 1884009 - 1883780
Alignment:
Q  267 ttttgttttctacaaatgcatgcattttcgtcgactgaaggattactatccgtagagctattaatcttgttgttctggtcatgggcagttatgtcattca 366  Q
    |||||||||||||||||||||    ||||||||   |||||| |||||||||||||| ||||| | |||||||||||||||||| | |||||||||||||    
T  1884009 ttttgttttctacaaatgcat----tttcgtcgctagaaggaatactatccgtagagttattatttttgttgttctggtcatggacggttatgtcattca 1883914  T
Q  367 cctgtgatttcgtcgtgttgtccctatcaaacaacaatgaatcaatggacaatatagtagagtcaataatttgattgtttctaccacgtggaaccctaat 466  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||  |||||||||||| |||| |||| ||||||||||||||||||    
T  1883913 cctgtgatttcgtcgcgttgtcgctatcaaacaacaatgaatcaatggacaacatag--gagtcaataattcgattctttccaccacgtggaaccctaat 1883816  T
Q  467 tggtccacatctctgttctgattgtttatgttgttg 502  Q
    |||| |||||||||||||||||| ||||||||||||    
T  1883815 tggttcacatctctgttctgattatttatgttgttg 1883780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 41 - 194
Target Start/End: Complemental strand, 1885515 - 1885363
Alignment:
Q  41 cgatactcgctaaagttaaacgtcatgagaggattttcatttagagaaccttgatcattatcnnnnnnntccaatggtaaggcgctatgtagtggaaatt 140  Q
    ||||| || |||| ||||||||||| || |||||| |||||||||||||||||||||||||        |||||| ||||||| || |||||||||||||    
T  1885515 cgataatcactaatgttaaacgtcacgaaaggattgtcatttagagaaccttgatcattat-aaaaatatccaattgtaaggcactctgtagtggaaatt 1885417  T
Q  141 gaaagagaaggtatagctgtttggccatcaccatattcttctgatcctttctta 194  Q
    |||||||||||||| |||||||||| |||||||||||||||||||| |||||||    
T  1885416 gaaagagaaggtatggctgtttggctatcaccatattcttctgatcatttctta 1885363  T

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Target: chr7; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 1884232 - 1884150
Alignment:
Q  188 tttcttattatgagacttatcttttttagtggctcgtagttttttattcactcctatgtttgaagtccaatgcatattattttg 271  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1884232 tttcttattatgagacttat-ttttttagtggctcgtagttttttattcactcctatgtttgaagtccaatgcatattattttg 1884150  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 431 - 508
Target Start/End: Complemental strand, 24840482 - 24840404
Alignment:
Q  431 aataatttgattgtttctaccacgtggaaccctaattggtccacatctc-tgttctgattgtttatgttgttgttgttg 508  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||| | ||||||  || ||| ||||||||||||||    
T  24840482 aatagtttgattgtttctaccaagtggaaccctaattggtccacatcccttgttctatttttttttgttgttgttgttg 24840404  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 435 - 512
Target Start/End: Original strand, 1220200 - 1220275
Alignment:
Q  435 atttgattgtttctaccacgtggaaccctaattggtccacatct-ctgttctgattgtttatgttgttgttgttgtggt 512  Q
    |||||||||||||||||||   |||| ||||||||| ||||||| ||||| ||||||||| ||||||||| ||||||||    
T  1220200 atttgattgtttctaccac---gaactctaattggttcacatctcctgttatgattgtttctgttgttgtagttgtggt 1220275  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 457 - 508
Target Start/End: Original strand, 13885937 - 13885989
Alignment:
Q  457 gaaccctaattggtccacatctc-tgttctgattgtttatgttgttgttgttg 508  Q
    |||||||||||||| |||||||| |||||||||||||| ||||||||| ||||    
T  13885937 gaaccctaattggttcacatctcatgttctgattgtttttgttgttgtagttg 13885989  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 509
Target Start/End: Original strand, 8916130 - 8916211
Alignment:
Q  429 tcaataatttgattgtttctaccacgtggaaccctaattggtcc-acatctctgttctgattgtttatgttgttgttgttgt 509  Q
    |||||||||| ||||||||||||| ||| |||| || ||||||| ||  | |||||||| ||| || |||||||||||||||    
T  8916130 tcaataatttaattgtttctaccatgtgaaaccatacttggtccaactcccctgttctggttggttctgttgttgttgttgt 8916211  T

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Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 172 - 271
Target Start/End: Complemental strand, 3417914 - 3417815
Alignment:
Q  172 catattcttctgatcctttcttattatgagacttatcttttttagtggctcgtagttttttattcactcctatgtttgaagtccaatgcatattattttg 271  Q
    |||||||||||||||||||  ||| |||||| || ||||||||||| |||||| |||||| ||||||||| ||||| |||| ||||||||||||||||||    
T  3417914 catattcttctgatccttttctatgatgagatttctcttttttagttgctcgtggtttttgattcactcccatgttagaagaccaatgcatattattttg 3417815  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 286 - 365
Target Start/End: Complemental strand, 3417546 - 3417467
Alignment:
Q  286 atgcattttcgtcgactgaaggattactatccgtagagctattaatcttgttgttctggtcatgggcagttatgtcattc 365  Q
    |||||||||||||| | |||||| |||| || |||||||||||| |||||||||||||||||||||| | ||||||||||    
T  3417546 atgcattttcgtcgccagaaggaatactgtctgtagagctattattcttgttgttctggtcatgggcggctatgtcattc 3417467  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 429 - 493
Target Start/End: Original strand, 32162848 - 32162913
Alignment:
Q  429 tcaataatttgattgtttctaccacgtggaaccctaattggtccacatc-tctgttctgattgttt 493  Q
    ||||||||| ||||||||| |||||||| |||| ||||||||| || || ||||||||||||||||    
T  32162848 tcaataattcgattgtttccaccacgtgaaaccttaattggtcaacctcctctgttctgattgttt 32162913  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 429 - 473
Target Start/End: Complemental strand, 28738219 - 28738175
Alignment:
Q  429 tcaataatttgattgtttctaccacgtggaaccctaattggtcca 473  Q
    |||| |||||||||||||  |||||||||||| ||||||||||||    
T  28738219 tcaaaaatttgattgtttacaccacgtggaactctaattggtcca 28738175  T

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Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 427 - 508
Target Start/End: Original strand, 9868153 - 9868235
Alignment:
Q  427 agtcaataatttgattgtttctaccacgtggaaccctaattggtccacatctc-tgttctgattgtttatgttgttgttgttg 508  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| || | ||||||||||| || ||||||||||||||    
T  9868153 agtcaataattcgattgtttctaccacgtggaaccctaattggtccacctcccttgttctgattgcttctgttgttgttgttg 9868235  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 429 - 508
Target Start/End: Original strand, 21848722 - 21848799
Alignment:
Q  429 tcaataatttgattgtttctaccacgtggaaccctaattggtccacatct-ctgttctgattgtttatgttgttgttgttg 508  Q
    |||||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||| ||||||||| ||||    
T  21848722 tcaataatttgattgtttctaccac---gaaccctaattggtccacatctcctgttctgattgtttctgttgttgtagttg 21848799  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 429 - 508
Target Start/End: Original strand, 8967555 - 8967634
Alignment:
Q  429 tcaataatttgattgtttctaccacgtggaaccctaattggtccacatctctgttctgattgtttatgttgttgttgttg 508  Q
    ||||||||| ||||||||| |||||  ||||||||||| ||||| | ||  ||||||||||||  |||||||||||||||    
T  8967555 tcaataattcgattgtttccaccacacggaaccctaataggtcctcctccttgttctgattgtgcatgttgttgttgttg 8967634  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 431 - 505
Target Start/End: Original strand, 9198996 - 9199071
Alignment:
Q  431 aataatttgattgtttctaccacgtggaaccctaattggtccacatctc-tgttctgattgtttatgttgttgttg 505  Q
    |||||||  |||||||| |||||||||||||||||| ||||||| |||| |||||||| | ||| |||||||||||    
T  9198996 aataattcaattgtttccaccacgtggaaccctaatcggtccacctctcttgttctgactttttctgttgttgttg 9199071  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 509
Target Start/End: Complemental strand, 23987878 - 23987845
Alignment:
Q  476 tctctgttctgattgtttatgttgttgttgttgt 509  Q
    ||||||||| ||||||||||||||||||||||||    
T  23987878 tctctgttcggattgtttatgttgttgttgttgt 23987845  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 432 - 505
Target Start/End: Original strand, 24578537 - 24578611
Alignment:
Q  432 ataatttgattgtttctaccacgtggaaccctaattggtccacatctc-tgttctgattgtttatgttgttgttg 505  Q
    ||||| ||| |||||| |||||||||||||||||||||| |||  | | |||| || ||||||||||||||||||    
T  24578537 ataatatgaatgtttccaccacgtggaaccctaattggttcaccgcccttgttttgtttgtttatgttgttgttg 24578611  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 509
Target Start/End: Complemental strand, 7634416 - 7634335
Alignment:
Q  429 tcaataatttgattgtttctaccacgtggaaccctaattggtcc-acatctctgttctgattgtttatgttgttgttgttgt 509  Q
    |||||||||| ||||||||||||| ||| |||| || ||||||| ||  | |||||||| ||| || |||||||||||||||    
T  7634416 tcaataatttaattgtttctaccatgtgaaaccatacttggtccaactcccctgttctggttggttctgttgttgttgttgt 7634335  T

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