View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7783_low_6 (Length: 509)
Name: NF7783_low_6
Description: NF7783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7783_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 17 - 432
Target Start/End: Complemental strand, 32276308 - 32275893
Alignment:
| Q |
17 |
gtgagttctactactactgagccaacaatctcagcttctccaggtgttttaccttatgtgacttctccagatatttcttcatttttccctactccaatga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32276308 |
gtgagttctactactactgagccaacaatctcagcttctccaggtgttttaccttatgtgacttctccagatatttcttcatttttccctactccaatga |
32276209 |
T |
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| Q |
117 |
gttcctctgaagctcctcatgaggctgaggcatctgcaccagcaccggcaccaagttcaggagaaaagtcctctagttcaactagattggattgtgtagc |
216 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32276208 |
gttcctctgaagctccttatgaggctgaggcatctgcaccagcaccggcaccaagttcaggagaaaagtcctctagttcaactagattggattgtgtagc |
32276109 |
T |
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| Q |
217 |
tgcaattgttggtattatgctctttagtgtgttccttagttttatagcttaggtattttgattggtttcatttgtcttaagaaggtcgaggttgtcattt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32276108 |
tgcaattgttggtattatgctctttagtgtgttccttagttttatagcttaggtattttgattggtttcatttgtcttaagaaggtcgaggttgtcattt |
32276009 |
T |
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| Q |
317 |
tcactcacttgtgttaaatgctattgtaatctctttattttaatttatgtttagtcaatttctttgttgattttctacattataatttatatatattata |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
32276008 |
tcactcacttgtgttaaatgctattgtaatctctttattttaatttatgtttagtcaatttctttgttggtttgctacattataatttatatatattata |
32275909 |
T |
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| Q |
417 |
tgatagatagaccatt |
432 |
Q |
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| T |
32275908 |
tgatagatagaccatt |
32275893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 416 - 494
Target Start/End: Complemental strand, 32275878 - 32275800
Alignment:
| Q |
416 |
atgatagatagaccattaatcatggtgaactatgcaattttggtttgtatttgtaattctaatgatctttgttccatat |
494 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
32275878 |
atgatagatagaccattaatcatggtgtactatgcaattttggtttgtttttgtaattctactgatctttgttccatat |
32275800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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