View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7783_low_9 (Length: 470)
Name: NF7783_low_9
Description: NF7783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7783_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 10 - 440
Target Start/End: Original strand, 12550619 - 12551049
Alignment:
| Q |
10 |
gcagaacctgtgcagaaggtacgtatggcttggtaatctctcattttaattatgaaaagtaaggttttaaattggggtaacaattatggtcacacacgtg |
109 |
Q |
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| T |
12550619 |
gcagatcctttgcagaaggtacgtatggcttggtaatctctcattttaattatgaaaagtaaggttttaaattggggtaacaattatggtcacacacatg |
12550718 |
T |
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| Q |
110 |
tcgatctatgatatgaaagaaagtcattattgatctggatagatcgagaaagttatctggattggagcactctgacgtctaagatagtaagtgaccaaag |
209 |
Q |
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| T |
12550719 |
tcgatctatgatatgaaagaaagtcattattgatctggatagaccgagaaagttatctggattggagcactctgacgtataagatagtaagtgaccaaag |
12550818 |
T |
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| Q |
210 |
agtgtgaggtttacgagttgagaaattgtgtaccttgcattgttgtgagaaggattatttatacaatcctagaaaggagctgttgatgcgtaaagggagg |
309 |
Q |
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| T |
12550819 |
agtgtgaggtttacgagttgagaaattgtgtaccttgcattgttgtgagaaagagtatttatacaatcctagaaaggagctgttgatgcgtaaagggagg |
12550918 |
T |
|
| Q |
310 |
aacgttacatatgacacccttcattaatggtgtgctcttgcagccgttcaaggtcattgaactcgttgaggcgttacaaatttcaagaatcttatgacag |
409 |
Q |
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| T |
12550919 |
aacgttacatatgacacccttcattaatggtgtgctcttgcagccgttcgagggcattgaactcgttgaggcgttacaaatttcaagaatcttatgccag |
12551018 |
T |
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| Q |
410 |
gtggaatggtctttgggtcaagtgtgattta |
440 |
Q |
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| T |
12551019 |
gtggattggtctttgggtcaagtgtgcttta |
12551049 |
T |
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