View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7784_high_2 (Length: 463)
Name: NF7784_high_2
Description: NF7784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7784_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 439; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Original strand, 40849567 - 40850017
Alignment:
| Q |
1 |
tatagatcaatcgtctaatacactaaagaatacatccttcaacacaaaccttgaggaaagcaagaggtccgtggcttttcagatctcctgcttcttcact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40849567 |
tatagatcaatcgtctaatacactaaagaatacatccttcaacacaaaccttgaggaaagcaagaggtccgtggcttttcagatctcctgcttcttcact |
40849666 |
T |
|
| Q |
101 |
atcaaccaaatatggggtcgtaggagacaccttaaattctttttgacctgaccacgtcatggcatcgacccaccttgaattccctgccaaa-tgagaaac |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
40849667 |
atcaaccaaatatggggtcgtaggagacaccttaaattctttttgacctgaccacgtcatggcatcgacccaccttgaattccctgccaaaatgagaaac |
40849766 |
T |
|
| Q |
200 |
acatttataaatctaaccaacatatttgtgtattctattttgacacaagcaattttggtttcaaattaatcaaacttataattaatgtgcttcagttaag |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40849767 |
acatttataaatctaaccaacatatttgtgtattctattttgacacaagcaattttggtttcaaattaatcaaacttataattaatgtgcttcagttaag |
40849866 |
T |
|
| Q |
300 |
gacaaattatttaagagagccagacttcaaattctgattagatttattgcagaactttacttactttccacccaaacacttgattgcccggttccccttg |
399 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40849867 |
gacaaattatttaagagagccggacttcaaattctgattagatttattgcagaactttacttactttccacccaaacacttgattgcccggttccccttg |
40849966 |
T |
|
| Q |
400 |
ggaactggtggactaacaccaaaaaagtaatcgaacttaccaagccaattg |
450 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40849967 |
ggaactggtggactaacaccaaaaaagtaatcgaacttaccaagccaattg |
40850017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 28 - 206
Target Start/End: Original strand, 40843654 - 40843832
Alignment:
| Q |
28 |
gaatacatccttcaacacaaaccttgaggaaagcaagaggtccgtggcttttcagatctcctgcttcttcactatcaaccaaatatggggtcgtaggaga |
127 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||| | |||||| |||||||||||| |||||||||||||||||| |||||| ||| || |||||||| |
|
|
| T |
40843654 |
gaatacatccttaaacacaaaccttaaggaaagccaaaggtccatggcttttcagaattcctgcttcttcactatccaccaaaaatgaagttgtaggaga |
40843753 |
T |
|
| Q |
128 |
caccttaaattctttttgacctgaccacgtcatggcatcgacccaccttgaattccctgccaaatgagaaacacattta |
206 |
Q |
| |
|
| |||||||| | | |||||||||||| |||||||||| |||||||| ||||||||| |||||||||| |||||||| |
|
|
| T |
40843754 |
ctccttaaatgttgtctgacctgaccacttcatggcatcaacccacctcgaattccctaacaaatgagaagcacattta |
40843832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 48 - 216
Target Start/End: Original strand, 40839056 - 40839224
Alignment:
| Q |
48 |
accttgaggaaagcaagaggtccgtggcttttcagatctcctgcttcttcactatcaaccaaatatggggtcgtaggagacaccttaaattctttttgac |
147 |
Q |
| |
|
|||||| ||||||| | ||||| |||||||||||| ||||||||||||||||||||||||| | || || ||||||||| ||||| || || | |||| |
|
|
| T |
40839056 |
accttgcggaaagccaatggtccatggcttttcagaattcctgcttcttcactatcaaccaaaaacggagttgtaggagactccttatatgctgtctgac |
40839155 |
T |
|
| Q |
148 |
ctgaccacgtcatggcatcgacccaccttgaattccctgccaaatgagaaacacatttataaatctaac |
216 |
Q |
| |
|
|||||||| |||||||||| | |||||||||||||||| ||||||||||| |||||||| || |||||| |
|
|
| T |
40839156 |
ctgaccacttcatggcatcaatccaccttgaattccctaccaaatgagaagcacatttagaattctaac |
40839224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University