View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7784_high_6 (Length: 356)
Name: NF7784_high_6
Description: NF7784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7784_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 6 - 341
Target Start/End: Original strand, 7126376 - 7126711
Alignment:
| Q |
6 |
tttcgtgttggagccgagcctttttcagcgtatccaagattgaatagtttgatgatttctaattttgaaattattggtgaacaaaatctatacatatcaa |
105 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7126376 |
tttcgtggtggagccgagcctttttcagcgtatccaagattgaatagtttgatgatttctaattttgaaattattggtgaacaaaatctatacatatcaa |
7126475 |
T |
|
| Q |
106 |
gtaccacgcttgtcaaattaaaaatacaagtatattatgaacccaagaaaaaccactgcaaaattgagttattgacgccaggtctttgtacttttgcttt |
205 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
7126476 |
gtaccacgcttgtcaaattaaaaattcaagtatattatgaacccaagaaaaactactgcaaaattgagttatcaacgccaggtctttgtactttttcttt |
7126575 |
T |
|
| Q |
206 |
tgtcggtacacctttcgagatactatcaggaaacaatcctagttctgttaaacacgtcaagatttatgcaaatatgtggtggaattatgtaacggctcct |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7126576 |
tgtcggtacacctttcgagatactatcaggaaacaatcctagttctgttaaacacgtcaagatttatgcaaatatgtggtggaattatgtaactgctcct |
7126675 |
T |
|
| Q |
306 |
tcgattctccttagctggttgcaagagcttgctgat |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
7126676 |
tcgattctccttagctggttgcaagagcttgctgat |
7126711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 45 - 131
Target Start/End: Original strand, 7119253 - 7119339
Alignment:
| Q |
45 |
ttgaatagtttgatgatttctaattttgaaattattggtgaacaaaatctatacatatcaagtaccacgcttgtcaaattaaaaata |
131 |
Q |
| |
|
||||||||||||||| ||||| ||||| ||||| |||| ||||||||||||| |||||||||||||||||| | ||||||| ||||| |
|
|
| T |
7119253 |
ttgaatagtttgatgctttctgattttaaaattcttggggaacaaaatctatccatatcaagtaccacgctggacaaattagaaata |
7119339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 45 - 131
Target Start/End: Complemental strand, 7103864 - 7103778
Alignment:
| Q |
45 |
ttgaatagtttgatgatttctaattttgaaattattggtgaacaaaatctatacatatcaagtaccacgcttgtcaaattaaaaata |
131 |
Q |
| |
|
||||| ||||||| ||||||| || | ||||| | |||||||||||||||| ||||||||||| ||||||||| ||||||| |||| |
|
|
| T |
7103864 |
ttgaaaagtttgaggatttcttgttctaaaattttgggtgaacaaaatctatgcatatcaagtatcacgcttgtaaaattaacaata |
7103778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 230
Target Start/End: Complemental strand, 7103741 - 7103676
Alignment:
| Q |
165 |
aaaattgagttattgacgccaggtctttgtacttttgcttttgtcggtacacctttcgagatacta |
230 |
Q |
| |
|
||||||||||||| |||||| |||||||| | |||| |||||||||||| ||||| |||||||| |
|
|
| T |
7103741 |
aaaattgagttatctacgccaagtctttgttcctttgtttttgtcggtactccttttcagatacta |
7103676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University