View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7784_low_1 (Length: 490)
Name: NF7784_low_1
Description: NF7784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7784_low_1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 25 - 490
Target Start/End: Complemental strand, 26915273 - 26914805
Alignment:
| Q |
25 |
ctgatgattataggccagatattgttcatcaggttagctactgttttcattactttgacaatgagctaatttcatgttttggattttttattgctggatt |
124 |
Q |
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| T |
26915273 |
ctgatgatcataggccagatattgttcatcaggttagctactgttttcattactttgacaatgagctgatttcatgttttggattttttattgctggatt |
26915174 |
T |
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| Q |
125 |
gcccaaaggcgcgatgttaagatgaaaacttgttgttgaagagtctaattacaacctagcttttgccgtttctttgaatagttatattctgttttatgtt |
224 |
Q |
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| T |
26915173 |
gcccaaaggtgcgatgttaagatgaaaacttgttcctgaagagtctaattacaacctagcttttgccgtttcttcgaatagttatattctgttttatgtt |
26915074 |
T |
|
| Q |
225 |
ccattgtagttttcttagaaaagtgttgtgtaacatatcccaaaaaagtttgaaaga---ttatctcgttttcttgatgtacctgactctgaatgtatat |
321 |
Q |
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| T |
26915073 |
ccattgtagttttcttagaaaagtgttgtgtaacatatcccaaaaaagtttgaaagattattatctcgttttcttgatgtacctgactctgaatgtatat |
26914974 |
T |
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| Q |
322 |
gaaatttatgctctccttgcaataatgggtagtcctctttgcttgtctggtagagtaagcgctgtattcatccgaaccgatgaaggaattcttattaaag |
421 |
Q |
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| T |
26914973 |
ggaatttaggctctccttgcaataatggatagtcctctttgcttgtctggtagagtaagcgctgtattcatccgaaccgatgaaggaattcttattaaag |
26914874 |
T |
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| Q |
422 |
ttgatccacaaggcaggataccaaaaacttttggaaagttttgtaatatgatgtgtaagtttctctatt |
490 |
Q |
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| T |
26914873 |
ttgatccacaaggcaggataccagaaacttttggaaagttttgtaatatgatgtgtaagtttctctatt |
26914805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 10 - 480
Target Start/End: Complemental strand, 51183007 - 51182552
Alignment:
| Q |
10 |
cgaagaatatgaatgctgatgattataggccagatattgttcatcaggttagctactgttttcattactttgacaatgagctaatttcatgttttggatt |
109 |
Q |
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|||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
51183007 |
cgaaaaatatgaatcctgatgattataggccagatattgttcatcaggttagccactgttttcattactttgacaatgag--------atgttttggatt |
51182916 |
T |
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| Q |
110 |
ttttattgctggattgcccaaaggcgcgatgttaagatgaaaacttgttgttgaagagtctaattacaacctagcttttgccgtttctttgaatagttat |
209 |
Q |
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| T |
51182915 |
ttttattgctggattgcccaaaggcgcgacgttgagatgaaaacttgttcttgaagagtctaattacaacctaacttc--------ctctgaatagttat |
51182824 |
T |
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| Q |
210 |
attctgttttatgttccattgtagttttcttagaaaagtgttgtgtaacatatcccaaaaaagtttgaaagattat---ctcgttttcttgatgtacctg |
306 |
Q |
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| T |
51182823 |
attttgttttatgttccattgtagttttcttagaaaagtattatt--ataaaaccctgaaaagtttgaaagattattatctcattttcttgatgtaccta |
51182726 |
T |
|
| Q |
307 |
actctgaatgtatatgaaatttatgctctccttgcaataatgggtagtcctctttgcttgtctggtagagtaagcgctgtattcatccgaaccgatgaag |
406 |
Q |
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| T |
51182725 |
actctgaatgtatatggattttaggctctccttgcaatattgagtagtgcactttgcttggctggtagagtaagcgctatattcatcagaaccggtgaag |
51182626 |
T |
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| Q |
407 |
gaattcttattaaagttgatccacaaggcaggataccaaaaacttttggaaagttttgtaatatgatgtgtaag |
480 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
51182625 |
gaattcttattaaagttgatccacaaaccaggataccaaaaacttttggaaatttttgtaatatgatgggtaag |
51182552 |
T |
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