View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7784_low_10 (Length: 269)
Name: NF7784_low_10
Description: NF7784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7784_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 27062754 - 27062999
Alignment:
| Q |
1 |
ttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaaccttatattttcattttcattcatcaaactcaacttaagtcttgttatcgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
27062754 |
ttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaaccttatattttcgtt------catcaaactcaacttaagtcttgttatcgt |
27062847 |
T |
|
| Q |
101 |
ttcgccctctactttaaaacaattatgcttaataatttcagtattaggttgattcacaaagggtgaaaatgcaacagattctctgtccatggggcattgt |
200 |
Q |
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||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27062848 |
ttcgccctctactttaaaacaatattgcttaataattttagtattaggttgattcacaaagggtgaaaatgcaacagattctctgtccatggggcattgt |
27062947 |
T |
|
| Q |
201 |
ggaaatggttgtgtagttattgttccaacttggctttctctttcccacacag |
252 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
27062948 |
ggaaatggttgtgtagttattgttccaacttggttttctctttcccacacag |
27062999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 27069821 - 27070072
Alignment:
| Q |
1 |
ttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaaccttatattttcattttcattcatcaaactcaacttaagtcttgttatcgt |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||| |||| ||| |||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
27069821 |
ttgctcttgacctccacacataacctgcaagaacttcaaaagttgtaaaccctattttttcacttttattcatcaaactcaacttaagtcttgttatcgt |
27069920 |
T |
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| Q |
101 |
ttcgccctctactttaaaacaattatgcttaataatttcagtattaggttgattcacaaagggtgaaaatgcaacagattctctgtccatggggcattgt |
200 |
Q |
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| T |
27069921 |
ttcgccctctactttaaaagaatattgcttaataattgtagtattagtttgattcacaaagggtgaaaatgcaacagattttctgtccatgggacattgt |
27070020 |
T |
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| Q |
201 |
ggaaatggttgtgtagttattgttccaacttggctttctctttcccacacag |
252 |
Q |
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||||| |||||| ||| ||||| ||||||||| |||||||||||||||||| |
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| T |
27070021 |
ggaaaaggttgtatagctattgatccaacttgtgtttctctttcccacacag |
27070072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 27085877 - 27086128
Alignment:
| Q |
1 |
ttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaaccttatattttcattttcattcatcaaactcaacttaagtcttgttatcgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
27085877 |
ttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaaccttatattttcattttcattcatcaaactcaacttaagtcttcttatcat |
27085976 |
T |
|
| Q |
101 |
ttcgccctctactttaaaacaattatgcttaataatttcagtattaggttgattcacaaagggtgaaaatgcaacagattctctgtccatggggcattgt |
200 |
Q |
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||| ||||||||||||||||||| || ||||| || ||||||| |||||| ||||||||||||| || ||||||||||| ||||||||| |||||| |
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| T |
27085977 |
ttcaccctctactttaaaacaatattgtttaattatcgtagtattattttgatttacaaagggtgaaagtgaaacagattctcggtccatgggacattgt |
27086076 |
T |
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| Q |
201 |
ggaaatggttgtgtagttattgttccaacttggctttctctttcccacacag |
252 |
Q |
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||||| | |||| ||| ||||| ||||||||| |||||||||||||||||| |
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| T |
27086077 |
ggaaaagtttgtatagctattgatccaacttgtttttctctttcccacacag |
27086128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 27041399 - 27041650
Alignment:
| Q |
1 |
ttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaaccttatattttcattttcattcatcaaactcaacttaagtcttgttatcgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||| ||||||| ||||||| | |
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| T |
27041399 |
ttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaacctcattttttcatttttattcatcaaactcaatttaagtcctgttatcat |
27041498 |
T |
|
| Q |
101 |
ttcgccctctactttaaaacaattatgcttaataatttcagtattaggttgattcacaaagggtgaaaatgcaacagattctctgtccatggggcattgt |
200 |
Q |
| |
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||| ||||||||||||||||||| || ||||| || ||||||| |||||| ||||||||||||| || ||||||||||| ||||||||| |||||| |
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| T |
27041499 |
ttcaccctctactttaaaacaatattgtttaattatcgtagtattattttgatttacaaagggtgaaagtgaaacagattctcggtccatgggacattgt |
27041598 |
T |
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| Q |
201 |
ggaaatggttgtgtagttattgttccaacttggctttctctttcccacacag |
252 |
Q |
| |
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||||| |||| | ||| ||||| || |||||| |||||||||||||||||| |
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| T |
27041599 |
ggaaaaggttttatagctattgatcgaacttgtttttctctttcccacacag |
27041650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 27098543 - 27098794
Alignment:
| Q |
1 |
ttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaaccttatattttcattttcattcatcaaactcaacttaagtcttgttatcgt |
100 |
Q |
| |
|
|||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| || |||| |||||||| ||||||||||| ||||||||| | |
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| T |
27098543 |
ttgctcttgatctccaaacataacctgcaattgattcaaaagttgtgaaccttatatttccactttccttcatcaagctcaacttaagccttgttatcat |
27098642 |
T |
|
| Q |
101 |
ttcgccctctactttaaaacaattatgcttaataatttcagtattaggttgattcacaaagggtgaaaatgcaacagattctctgtccatggggcattgt |
200 |
Q |
| |
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||| || || | |||||||||| ||||| |||| | ||| || ||||||||| ||| |||||||||||||||||||| ||| ||| |||| || | |
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| T |
27098643 |
ttcaccatcaatattaaaacaatattgcttcataactgtagtgttgtgttgattcagaaaaggtgaaaatgcaacagattccttgttcatagggctttct |
27098742 |
T |
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| Q |
201 |
ggaaatggttgtgtagttattgttccaacttggctttctctttcccacacag |
252 |
Q |
| |
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|||||||||||| |||||||| ||||| | || |||||||||||||||| |
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| T |
27098743 |
ggaaatggttgttcagttattgatccaataagtctctctctttcccacacag |
27098794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 27105542 - 27105793
Alignment:
| Q |
1 |
ttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaaccttatattttcattttcattcatcaaactcaacttaagtcttgttatcgt |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||||||||||||||| | || |||| |||||||||||||||||||| |||||| | | |
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| T |
27105542 |
ttgctcttgatctccacacataacctgcaattgattcaaaagttgtgaaccttatacctccactttccttcatcaaactcaacttaagctttgttaacat |
27105641 |
T |
|
| Q |
101 |
ttcgccctctactttaaaacaattatgcttaataatttcagtattaggttgattcacaaagggtgaaaatgcaacagattctctgtccatggggcattgt |
200 |
Q |
| |
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||| ||||| || |||||||||| | ||| |||| | ||| || |||||||| ||| |||||||||||||||||||| ||| ||| |||| || | |
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| T |
27105642 |
ttcaccctccacattaaaacaatatttcttcataactgtagtgttgtcttgattcagaaaaggtgaaaatgcaacagattccttgttcatagggctttct |
27105741 |
T |
|
| Q |
201 |
ggaaatggttgtgtagttattgttccaacttggctttctctttcccacacag |
252 |
Q |
| |
|
|||||||||||| ||||||||| ||||| | || |||||||||||||||| |
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| T |
27105742 |
ggaaatggttgtttagttattgatccaataagtctctctctttcccacacag |
27105793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 27056712 - 27056790
Alignment:
| Q |
1 |
ttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaacctta-tattttcattttcattcatcaaact |
79 |
Q |
| |
|
|||||||||||||| |||||||||||||||| || ||||||||||||||||||| | |||||||||| |||||||||||| |
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| T |
27056712 |
ttgctcttgacctctacacataacctgcaagtac-tcaaaagttgtgaaccttatttttttcatttttattcatcaaact |
27056790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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