View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7784_low_3 (Length: 399)
Name: NF7784_low_3
Description: NF7784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7784_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 13 - 385
Target Start/End: Original strand, 12245369 - 12245741
Alignment:
| Q |
13 |
agcagagaatcttcaagagaacaaaaaagccataaaagggaacacattcgttacggttcaatgtgacggaagcaacaaggaagtgatcaccacgaaactt |
112 |
Q |
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| T |
12245369 |
agcagagaatcttcaagagaacaaaaaagccataaaagggaacacattcgttacggttcaatgtgacggaagcaacagggaagtgagcaccacgaaactt |
12245468 |
T |
|
| Q |
113 |
gattccgaaggaggaagttaccctacatggaacgagaagttggtaatggatgtgccattacatgcaaggttcctaacaatagaggtgaagtacaaaacaa |
212 |
Q |
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| T |
12245469 |
gattccgaaggaggaagttaccctacatggaacgagaagttggtaatggatgtgccattacatgcaaggttcctaacaatagaggtgaagtacaaaacaa |
12245568 |
T |
|
| Q |
213 |
gaggtagtagtggcaatagtgttggaatggctagaatacctgtttccgattttcttggagggtatgtgcatgaaaatcaattgcaatttttaagttatag |
312 |
Q |
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| T |
12245569 |
gaggtagtagtagcaatagtgttggaatggctagaatacctgtttccgattttcttggagggtatgtgcatgaaaatcaattgcaatttttaagttatag |
12245668 |
T |
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| Q |
313 |
gttgtgggataatagagttaggagaaatggggttgtaaatatttcagtaaaggtaaaaatgtcccaacaaaat |
385 |
Q |
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| T |
12245669 |
gttgtgggataatagagttaggagaaatggggttgtaaatatttcagtaaaggtaaaaatgtcccaacaaaat |
12245741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 17 - 385
Target Start/End: Original strand, 12238832 - 12239200
Alignment:
| Q |
17 |
gagaatcttcaagagaacaaaaaagccataaaagggaacacattcgttacggttcaatgtgacggaagcaacaaggaagtgatcaccacgaaacttgatt |
116 |
Q |
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| T |
12238832 |
gagaatcttcaagagaacaaaaaagccataaaaggaaacacatttgtcacggttcaatgtgacggaagcaataatgaagtgagcaccacgaaacttgatt |
12238931 |
T |
|
| Q |
117 |
ccgaaggaggaagttaccctacatggaacgagaagttggtaatggatgtgccattacatgcaaggttcctaacaatagaggtgaagtacaaaacaagagg |
216 |
Q |
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| T |
12238932 |
ctgaaggcggaagttatcctacatggaacgagaaggtagtgatcgacgtgccattacatgcaaggttcgttacaatagaggtgaagtacaaaactagagg |
12239031 |
T |
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| Q |
217 |
tagtagtggcaatagtgttggaatggctagaatacctgtttccgattttcttggagggtatgtgcatgaaaatcaattgcaatttttaagttataggttg |
316 |
Q |
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| T |
12239032 |
aagtagtagtaatagtgttggaatggctagaataccggtttccgattttgttggagggtatgtacatgaaaatcaattgcaatttttaagttataggttg |
12239131 |
T |
|
| Q |
317 |
tgggataatagagttaggagaaatggggttgtaaatatttcagtaaaggtaaaaatgtcccaacaaaat |
385 |
Q |
| |
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| T |
12239132 |
tgggataatagagttatgagaaatggggttgtaaatatttctgtgaaggtaaaaatgtcccaacaaaat |
12239200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 17 - 385
Target Start/End: Original strand, 12235347 - 12235712
Alignment:
| Q |
17 |
gagaatcttcaagagaacaaaaaagccataaaagggaacacattcgttacggttcaatgtgacggaagcaacaaggaagtgatcaccacgaaacttgatt |
116 |
Q |
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| T |
12235347 |
gagaatcttcaagagaacaaaaaagccataaaaggaaacacatttgtcatggttcaatgtgacggaagcaataatgaagtgagcaccacgaaacttgatt |
12235446 |
T |
|
| Q |
117 |
ccgaaggaggaagttaccctacatggaacgagaagttggtaatggatgtgccattacatgcaaggttcctaacaatagaggtgaagtacaaaacaagagg |
216 |
Q |
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| T |
12235447 |
ctgaaggcggaagttatcctacatggaacgagaaggtagtgatcgacgtgccattacatgcaaggttcgtaacaatagaggtgaagtacaaaacaagagg |
12235546 |
T |
|
| Q |
217 |
tagtagtggcaatagtgttggaatggctagaatacctgtttccgattttcttggagggtatgtgcatgaaaatcaattgcaatttttaagttataggttg |
316 |
Q |
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|||||| |||||||||||||| |||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
12235547 |
aagtagt---aatagtgttggaatagctagagtacctgtttccgattttgttggagggtatgtacatgaaaatcaattgcaatttttaagttataggttg |
12235643 |
T |
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| Q |
317 |
tgggataatagagttaggagaaatggggttgtaaatatttcagtaaaggtaaaaatgtcccaacaaaat |
385 |
Q |
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| T |
12235644 |
tgggataatagagttatgagaaatggggttgtaaatatttcagtgaaggtaaaaatgtcccaacaaaat |
12235712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 385
Target Start/End: Original strand, 12229297 - 12229665
Alignment:
| Q |
17 |
gagaatcttcaagagaacaaaaaagccataaaagggaacacattcgttacggttcaatgtgacggaagcaacaaggaagtgatcaccacgaaacttgatt |
116 |
Q |
| |
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|||||||| ||||| |||||||||||||||||||| |||||||| || ||||||||||||||||||||||| || ||||||| ||||||||||||||||| |
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| T |
12229297 |
gagaatctccaagaaaacaaaaaagccataaaaggaaacacatttgtcacggttcaatgtgacggaagcaataatgaagtgagcaccacgaaacttgatt |
12229396 |
T |
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| Q |
117 |
ccgaaggaggaagttaccctacatggaacgagaagttggtaatggatgtgccattacatgcaaggttcctaacaatagaggtgaagtacaaaacaagagg |
216 |
Q |
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| T |
12229397 |
ctgaaggcggaagttatcctacatggaacgagaaggtagtgatcgacatgccattacatgcaaggttcgttacaatagaggtgaagtacaaaactagagg |
12229496 |
T |
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| Q |
217 |
tagtagtggcaatagtgttggaatggctagaatacctgtttccgattttcttggagggtatgtgcatgaaaatcaattgcaatttttaagttataggttg |
316 |
Q |
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| T |
12229497 |
aagtagtagtaatagtgttggaatagctagagtacctgtttccgattttgttggagggtatgtacatgaaaatcaactgcaatttttaagttataggttg |
12229596 |
T |
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| Q |
317 |
tgggataatagagttaggagaaatggggttgtaaatatttcagtaaaggtaaaaatgtcccaacaaaat |
385 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
12229597 |
tgggataatagagttatgagaaatggggttgtaaatatttcagtgaaggtaaaaatgtcccaacaaaat |
12229665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 288 - 360
Target Start/End: Original strand, 28558667 - 28558739
Alignment:
| Q |
288 |
atcaattgcaatttttaagttataggttgtgggataatagagttaggagaaatggggttgtaaatatttcagt |
360 |
Q |
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| T |
28558667 |
atcaagtgcaatttttgagttataggttatgggacagtagggttaggagaaatggtgttatcaatatttcagt |
28558739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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