View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7784_low_4 (Length: 377)

Name: NF7784_low_4
Description: NF7784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7784_low_4
NF7784_low_4
[»] chr2 (3 HSPs)
chr2 (226-359)||(35504171-35504304)
chr2 (6-202)||(35503965-35504160)
chr2 (75-116)||(6468727-6468768)
[»] chr3 (4 HSPs)
chr3 (74-151)||(31752736-31752813)
chr3 (77-152)||(15985232-15985307)
chr3 (74-148)||(44344772-44344846)
chr3 (73-148)||(47077644-47077719)
[»] chr5 (4 HSPs)
chr5 (77-152)||(41174350-41174425)
chr5 (77-152)||(844794-844869)
chr5 (80-109)||(28808157-28808186)
chr5 (76-148)||(10319953-10320025)
[»] chr1 (5 HSPs)
chr1 (57-152)||(44529227-44529321)
chr1 (72-112)||(46299439-46299479)
chr1 (73-152)||(49806015-49806094)
chr1 (82-152)||(27262790-27262860)
chr1 (77-151)||(31963039-31963113)
[»] chr7 (2 HSPs)
chr7 (72-152)||(41072425-41072505)
chr7 (50-120)||(1799504-1799574)
[»] chr4 (3 HSPs)
chr4 (73-148)||(27915204-27915279)
chr4 (78-148)||(11123453-11123523)
chr4 (75-149)||(26009729-26009803)
[»] chr8 (2 HSPs)
chr8 (73-152)||(7859167-7859246)
chr8 (70-112)||(41657677-41657719)


Alignment Details
Target: chr2 (Bit Score: 130; Significance: 3e-67; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 226 - 359
Target Start/End: Original strand, 35504171 - 35504304
Alignment:
Q  226 attatgaaacaaattgtcttctgttactttacaagccaaattagacaaatgatttgatcaactttcagaagtcccatcgttatgaaatgatatattaaca 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35504171 attatgaaacaaattgtcttctgttactttacaagccaaattagacaaatgatttgatcaactttcagaagtcccatcgttatgaaatgatatattaaca 35504270  T
Q  326 ttggtttaacaataatggattattatgacagatc 359  Q
    |||||||| |||||||||||||||||||||||||    
T  35504271 ttggtttagcaataatggattattatgacagatc 35504304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 6 - 202
Target Start/End: Original strand, 35503965 - 35504160
Alignment:
Q  6 ctacattattctacattgaacgatcatatgatatacnnnnnnnagaaaaacgctaacaactgtcttaaggacacttgataagaaatttaaagtgaaaatt 105  Q
    |||||||||| |||||||||||||| ||||||||||       | |||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  35503965 ctacattattttacattgaacgatcttatgatatacttttttaaaaaaaacgctaacaactgtcttaagaacacttaataagaaatttaaagtgaaaatt 35504064  T
Q  106 ttattttagaagttgcgcatttaacacattaaaatattaaaaagtaaannnnnnnnaacataaaatttatcaattgtaagatcacttgttagcaaga 202  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||        ||||||||||||||||||||||||   ||||||||||||||    
T  35504065 ttatttta-aagttgcgcattcaacacattaaaatattaaaaagtaaatattttttaacataaaatttatcaattgtaagggtacttgttagcaaga 35504160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 6468727 - 6468768
Alignment:
Q  75 gacacttgataagaaatttaaagtgaaaattttattttagaa 116  Q
    |||||||| || ||| ||||||||||||||||||||||||||    
T  6468727 gacacttgttatgaagtttaaagtgaaaattttattttagaa 6468768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 74 - 151
Target Start/End: Complemental strand, 31752813 - 31752736
Alignment:
Q  74 ggacacttgataagaaatttaaagtgaaaattttattttagaagttgcgcatttaacacattaaaatattaaaaagta 151  Q
    ||||||||||||||||||||||||| |||  |||||||| ||||||| | ||| ||||||||||||||||||||||||    
T  31752813 ggacacttgataagaaatttaaagtaaaaggtttattttggaagttgtgtattcaacacattaaaatattaaaaagta 31752736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 152
Target Start/End: Original strand, 15985232 - 15985307
Alignment:
Q  77 cacttgataagaaatttaaagtgaaaattttattttagaagttgcgcatttaacacattaaaatattaaaaagtaa 152  Q
    ||||||||||||| ||||||||||||  ||||| |  ||||||| ||||| |||||||| ||||||||||||||||    
T  15985232 cacttgataagaagtttaaagtgaaaggtttatatgggaagttgagcattcaacacattgaaatattaaaaagtaa 15985307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 148
Target Start/End: Complemental strand, 44344846 - 44344772
Alignment:
Q  74 ggacacttgataagaaatttaaagtgaaaattttattttagaagttgcgcatttaacacattaaaatattaaaaa 148  Q
    |||||||||||||||| |||||||| |||  |||||||  ||||||| | ||| |||| ||||||||||||||||    
T  44344846 ggacacttgataagaagtttaaagttaaacatttatttcggaagttgtgtattcaacatattaaaatattaaaaa 44344772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 73 - 148
Target Start/End: Original strand, 47077644 - 47077719
Alignment:
Q  73 aggacacttgataagaaatttaaagtgaaaattttattttagaagttgcgcatttaacacattaaaatattaaaaa 148  Q
    |||||| || |||| || |||||||| ||||||||||||| ||| ||| | |||||||| |||||||||| |||||    
T  47077644 aggacattttataaaaagtttaaagtaaaaattttatttttgaatttgtgtatttaacatattaaaatataaaaaa 47077719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 77 - 152
Target Start/End: Complemental strand, 41174425 - 41174350
Alignment:
Q  77 cacttgataagaaatttaaagtgaaaattttattttagaagttgcgcatttaacacattaaaatattaaaaagtaa 152  Q
    |||||||||||||  |||||||| || |||||| || ||||||| |||||||||||||| ||||||||||||||||    
T  41174425 cacttgataagaagcttaaagtggaagttttatcttggaagttgtgcatttaacacattgaaatattaaaaagtaa 41174350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 152
Target Start/End: Complemental strand, 844869 - 844794
Alignment:
Q  77 cacttgataagaaatttaaagtgaaaattttattttagaagttgcgcatttaacacattaaaatattaaaaagtaa 152  Q
    ||||||||||||| |||||||||  |||| |||||| ||||||| | ||| |||||||| ||| ||||||||||||    
T  844869 cacttgataagaagtttaaagtggtaattctattttggaagttgtgtattcaacacattgaaacattaaaaagtaa 844794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 109
Target Start/End: Original strand, 28808157 - 28808186
Alignment:
Q  80 ttgataagaaatttaaagtgaaaattttat 109  Q
    ||||||||||||||||||||||||||||||    
T  28808157 ttgataagaaatttaaagtgaaaattttat 28808186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 148
Target Start/End: Original strand, 10319953 - 10320025
Alignment:
Q  76 acacttgataagaaatttaaagtgaaaattttattttagaagttgcgcatttaacacattaaaatattaaaaa 148  Q
    ||||||| |||||||||||||  |||| |||||| ||| |||||| | ||| ||||||||||||  |||||||    
T  10319953 acacttgttaagaaatttaaaaagaaatttttatcttaaaagttgtgtattaaacacattaaaactttaaaaa 10320025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 152
Target Start/End: Original strand, 44529227 - 44529321
Alignment:
Q  57 gctaacaactgtcttaaggacacttgataagaaatttaaagtgaaaattttattttagaagttgcgcatttaacacattaaaatattaaaaagtaa 152  Q
    |||||||| ||||||| ||||| |||||||||| ||||||||| || |||||| ||| |||||| | ||| |||| ||||||| ||||||||||||    
T  44529227 gctaacaagtgtctta-ggacatttgataagaagtttaaagtggaagttttatcttaaaagttgtgtattcaacatattaaaacattaaaaagtaa 44529321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 46299439 - 46299479
Alignment:
Q  72 aaggacacttgataagaaatttaaagtgaaaattttatttt 112  Q
    ||||||||||||||||||||||||||| |||| ||||||||    
T  46299439 aaggacacttgataagaaatttaaagttaaaaatttatttt 46299479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 73 - 152
Target Start/End: Complemental strand, 49806094 - 49806015
Alignment:
Q  73 aggacacttgataagaaatttaaagtgaaaattttattttagaagttgcgcatttaacacattaaaatattaaaaagtaa 152  Q
    ||||||||||||||||  |||||| | |||||||| | ||  || ||| ||||| ||||||||||||||| |||||||||    
T  49806094 aggacacttgataagaggtttaaaataaaaattttgtcttgaaatttgtgcattcaacacattaaaatataaaaaagtaa 49806015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 152
Target Start/End: Complemental strand, 27262860 - 27262790
Alignment:
Q  82 gataagaaatttaaagtgaaaattttattttagaagttgcgcatttaacacattaaaatattaaaaagtaa 152  Q
    |||||||| |||||| || ||||||| | |||||| ||| | ||| |||||||||||| ||||||||||||    
T  27262860 gataagaagtttaaaatggaaattttgtcttagaatttgtgtattcaacacattaaaacattaaaaagtaa 27262790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 151
Target Start/End: Complemental strand, 31963113 - 31963039
Alignment:
Q  77 cacttgataagaaatttaaagtgaaaattttattttagaagttgcgcatttaacacattaaaatattaaaaagta 151  Q
    ||||||||||||| |||||| || ||||||| |||| ||| ||| | ||| |||||||| ||| |||||||||||    
T  31963113 cacttgataagaagtttaaaatggaaattttgttttggaatttgtgtattcaacacattgaaacattaaaaagta 31963039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 72 - 152
Target Start/End: Complemental strand, 41072505 - 41072425
Alignment:
Q  72 aaggacacttgataagaaatttaaagtgaaaattttattttagaagttgcgcatttaacacattaaaatattaaaaagtaa 152  Q
    ||||||||||||||| ||||||||| |||||| |||| ||||||| ||| ||||| |||||||| ||| |  |||||||||    
T  41072505 aaggacacttgataaaaaatttaaaatgaaaactttactttagaaattgtgcattcaacacattgaaacaacaaaaagtaa 41072425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 120
Target Start/End: Original strand, 1799504 - 1799574
Alignment:
Q  50 gaaaaacgctaacaactgtcttaaggacacttgataagaaatttaaagtgaaaattttattttagaagttg 120  Q
    |||||| |||||||| || ||| |||  | |||||||||| ||||||||| |||||||||||| |||||||    
T  1799504 gaaaaatgctaacaagtgcctttaggttatttgataagaagtttaaagtgtaaattttattttggaagttg 1799574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 148
Target Start/End: Original strand, 27915204 - 27915279
Alignment:
Q  73 aggacacttgataagaaatttaaagtgaaaattttattttagaagttgcgcatttaacacattaaaatattaaaaa 148  Q
    |||||||||||||||||||||||| || ||  ||||| ||| |||||| | ||| |||||||| ||||||||||||    
T  27915204 aggacacttgataagaaatttaaaatggaaggtttatcttaaaagttgtgtattcaacacattcaaatattaaaaa 27915279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 11123453 - 11123523
Alignment:
Q  78 acttgataagaaatttaaagtgaaaattttattttagaagttgcgcatttaacacattaaaatattaaaaa 148  Q
    |||||||||||| |||||||||||||||||||  ||||| ||| | ||| |||| ||||||| || |||||    
T  11123453 acttgataagaagtttaaagtgaaaattttatcatagaatttgtgtattcaacatattaaaacatcaaaaa 11123523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 149
Target Start/End: Complemental strand, 26009803 - 26009729
Alignment:
Q  75 gacacttgataagaaatttaaagtgaaaattttattttagaagttgcgcatttaacacattaaaatattaaaaag 149  Q
    |||||||||||||||||||||||| |||| ||||| || ||| ||| | ||| || | ||| |||||||||||||    
T  26009803 gacacttgataagaaatttaaagtaaaaactttatcttggaatttgtgtattcaaaatattgaaatattaaaaag 26009729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 73 - 152
Target Start/End: Complemental strand, 7859246 - 7859167
Alignment:
Q  73 aggacacttgataagaaatttaaagtgaaaattttattttagaagttgcgcatttaacacattaaaatattaaaaagtaa 152  Q
    ||||| |||||||| || |||||||||  |||||||| ||  |||||| | ||| |||||||||||| ||||||||||||    
T  7859246 aggacccttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacacattaaaacattaaaaagtaa 7859167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 112
Target Start/End: Complemental strand, 41657719 - 41657677
Alignment:
Q  70 ttaaggacacttgataagaaatttaaagtgaaaattttatttt 112  Q
    ||||||||||||||||| |||||||||||| | ||||||||||    
T  41657719 ttaaggacacttgataaaaaatttaaagtggagattttatttt 41657677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University