View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7784_low_7 (Length: 345)

Name: NF7784_low_7
Description: NF7784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7784_low_7
NF7784_low_7
[»] chr7 (1 HSPs)
chr7 (20-333)||(12861314-12861627)
[»] chr3 (3 HSPs)
chr3 (20-303)||(17778978-17779267)
chr3 (20-303)||(19080279-19080568)
chr3 (95-303)||(2293553-2293761)
[»] chr8 (8 HSPs)
chr8 (20-303)||(9506007-9506290)
chr8 (20-303)||(290942-291225)
chr8 (197-303)||(267758-267864)
chr8 (197-303)||(648057-648163)
chr8 (197-303)||(833792-833898)
chr8 (103-145)||(267916-267958)
chr8 (103-145)||(647963-648005)
chr8 (103-145)||(833698-833740)
[»] chr2 (3 HSPs)
chr2 (85-249)||(29560008-29560172)
chr2 (104-303)||(19387436-19387635)
chr2 (104-303)||(18598651-18598850)
[»] chr6 (4 HSPs)
chr6 (95-304)||(19822531-19822740)
chr6 (176-303)||(19887622-19887749)
chr6 (95-145)||(19887780-19887830)
chr6 (20-57)||(19822778-19822815)
[»] chr1 (6 HSPs)
chr1 (103-141)||(18213884-18213922)
chr1 (179-300)||(165774-165895)
chr1 (179-303)||(140380-140504)
chr1 (103-135)||(165698-165730)
chr1 (103-138)||(140304-140339)
chr1 (195-303)||(18213728-18213836)


Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 20 - 333
Target Start/End: Original strand, 12861314 - 12861627
Alignment:
Q  20 tccatggcatgaaatgaaccaatggcaataggatcttggaaaaattcagagacttgttgtgccccaatagatattgtgataatatcaactccatcagcaa 119  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12861314 tccatggcatgaaatgaaccaatggcaagaggatcttggaaaaattcaaagacttgttgtgccccaatagatattgtgataatatcaactccatcagcaa 12861413  T
Q  120 tggcatcatcaaatgcagctaaaatatcctcactactgcatctaccatcaccaccgcatactttgtatacagaagtccttgaagaaggaactcctcctct 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12861414 tggcatcatcaaatgcagctaaaatatcctcactactgcatctaccatcaccaccgcatactttgtatacagaagtccttgaagaaggaactcctcctct 12861513  T
Q  220 tgcagtgccttcagcaagaccataaaagcttgcatctttgacttctcttccacccgcggttgatgttgtgtgggttccatgacctccagtatctcttgca 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12861514 tgcagtgccttcagcaagaccataaaagcttgcatctttgacttctcttccacccgcggttgatgctgtgtgggttccatgacctccagtatctcttgca 12861613  T
Q  320 tcttgatgtccatc 333  Q
    ||||||| ||||||    
T  12861614 tcttgatctccatc 12861627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 20 - 303
Target Start/End: Original strand, 17778978 - 17779267
Alignment:
Q  20 tccatggcatgaaatgaaccaatggcaataggatcttggaaaaattcagagacttgttgtgccccaatagatattgtgataatatcaactccatcagcaa 119  Q
    |||||||||||||| |||||||||||||||||||| |  | ||| || ||| | ||||  |  |||| ||| | |||||| |  ||||||||||||| ||    
T  17778978 tccatggcatgaaaagaaccaatggcaataggatcattcagaaaatcggaggcatgttcgggaccaagagagactgtgatgacgtcaactccatcagaaa 17779077  T
Q  120 tggcatcatcaaatgcagctaaaatatcctcactactgcatctacc---atc---accaccgcatactttgtatacagaagtccttgaagaaggaactcc 213  Q
    | |||||||||||||| ||||||||| | |||| ||||||||||||   |||   | | ||||||| ||||||| ||| | |||||||||| ||||||||    
T  17779078 ttgcatcatcaaatgccgctaaaatagcatcaccactgcatctaccgttatctatatcgccgcatattttgtatgcagcaatccttgaagatggaactcc 17779177  T
Q  214 tcctcttgcagtgccttcagcaagaccataaaagcttgcatctttgacttctcttccacccgcggttgatgttgtgtgggttccatgacc 303  Q
     ||||||||||||||||  |||| ||||||||||||  |||| |  || ||||||||||| || ||||||| ||||||||||| ||||||    
T  17779178 acctcttgcagtgccttttgcaaaaccataaaagctcacatcctccacctctcttccacctgccgttgatgctgtgtgggttctatgacc 17779267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 20 - 303
Target Start/End: Original strand, 19080279 - 19080568
Alignment:
Q  20 tccatggcatgaaatgaaccaatggcaataggatcttggaaaaattcagagacttgttgtgccccaatagatattgtgataatatcaactccatcagcaa 119  Q
    |||||||||||||| |||||||||||||||||||| |  | ||| || ||| | ||||  |  |||| ||| | |||||| |  ||||||||||||| ||    
T  19080279 tccatggcatgaaaagaaccaatggcaataggatcattcagaaaatcggaggcatgttcgggaccaagagagactgtgatgacgtcaactccatcagaaa 19080378  T
Q  120 tggcatcatcaaatgcagctaaaatatcctcactactgcatctacc---atc---accaccgcatactttgtatacagaagtccttgaagaaggaactcc 213  Q
    | |||||||||||||| ||||||||| | |||| ||||||||||||   |||   | | ||||||| ||||||| ||| | |||||||||| ||||||||    
T  19080379 ttgcatcatcaaatgccgctaaaatagcatcaccactgcatctaccgttatctatatcgccgcatattttgtatgcagcaatccttgaagatggaactcc 19080478  T
Q  214 tcctcttgcagtgccttcagcaagaccataaaagcttgcatctttgacttctcttccacccgcggttgatgttgtgtgggttccatgacc 303  Q
     ||||||||||||||||  |||| ||||||||||||  |||| |  || ||||||||||| || ||||||| ||||||||||| ||||||    
T  19080479 acctcttgcagtgccttttgcaaaaccataaaagctcacatcctccacctctcttccacctgccgttgatgctgtgtgggttctatgacc 19080568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 95 - 303
Target Start/End: Complemental strand, 2293761 - 2293553
Alignment:
Q  95 gtgataatatcaactccatcagcaatggcatcatcaaatgcagctaaaatatcctcactactgcatctaccatcaccaccgcatactttgtatacagaag 194  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||    |||| ||||||| ||||| |      ||||||||||||||||| |     
T  2293761 gtgataacgtcaactccatcagcaatggcatcatcaaatgcagctaaaattagatcaccactgcatataccacctaagatgcatactttgtatacagcaa 2293662  T
Q  195 tccttgaagaaggaactcctcctcttgcagtgccttcagcaagaccataaaagcttgcatctttgacttctcttccacccgcggttgatgttgtgtgggt 294  Q
    |||||||||| |||||| | ||||||||||| ||||| ||||||||| |||||||  || | || ||||| | |||||| ||  |||||| |||||||||    
T  2293661 tccttgaagatggaactgcacctcttgcagttccttctgcaagaccaaaaaagctcacacccttcacttcacgtccacctgctattgatgatgtgtgggt 2293562  T
Q  295 tccatgacc 303  Q
    |||||||||    
T  2293561 tccatgacc 2293553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 20 - 303
Target Start/End: Complemental strand, 9506290 - 9506007
Alignment:
Q  20 tccatggcatgaaatgaaccaatggcaataggatcttggaaaaattc-agag-acttgttgtgccccaatagatattgtgataatatcaactccatcagc 117  Q
    |||||||||||||| ||||||||||||||||||||||  | |||||| | || | |||   |  |||||| || ||||||||||| ||||||||||||||    
T  9506290 tccatggcatgaaaagaaccaatggcaataggatcttttagaaattctacagcaattgggtt--cccaattgagattgtgataatgtcaactccatcagc 9506193  T
Q  118 aatggcatcatcaaatgcagctaaaatatcctcactactgcatctaccatcaccaccgcatactttgtatacagaagtccttgaagaaggaactcctcct 217  Q
    |||||||||||||||||||||||||||||| |  | | ||||  |||||||      ||||||||||||||||| | |||||||||| || ||||| |||    
T  9506192 aatggcatcatcaaatgcagctaaaatatcatttccattgcaagtaccatctgtgttgcatactttgtatacagcaatccttgaagatgggactccacct 9506093  T
Q  218 cttgcagtgccttcagcaagaccataaaagcttgcatctttgacttctcttccacccgcggttgatgttgtgtgggttccatgacc 303  Q
    ||||| |||||||  |||||||||||||||||  |  |  | || ||||||||||  || |||||||  |||||||||||||||||    
T  9506092 cttgcggtgccttttgcaagaccataaaagctcactcccatcacctctcttccacttgccgttgatgccgtgtgggttccatgacc 9506007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 20 - 303
Target Start/End: Complemental strand, 291225 - 290942
Alignment:
Q  20 tccatggcatgaaatgaaccaatggcaataggatcttggaaaaattc-agagacttgttgtgccccaatagatattgtgataatatcaactccatcagca 118  Q
    |||||||||||||| ||||||||||||||||||||||  | |||||| | || |   |||    ||||| || ||||||||||| |||||||||||||||    
T  291225 tccatggcatgaaaagaaccaatggcaataggatcttttagaaattctacag-caatttggcttccaattgagattgtgataatgtcaactccatcagca 291127  T
Q  119 atggcatcatcaaatgcagctaaaatatcctcactactgcatctaccatcaccaccgcatactttgtatacagaagtccttgaagaaggaactcctcctc 218  Q
    |||||||||||||||||||||||||||||||  |  |||||  |||||||     |||||||||||||||||  | || ||||||| |||||||| ||||    
T  291126 atggcatcatcaaatgcagctaaaatatcctttccgctgcagttaccatctttgtcgcatactttgtatacaacaatctttgaagacggaactccacctc 291027  T
Q  219 ttgcagtgccttcagcaagaccataaaagcttgcatctttgacttctcttccacccgcggttgatgttgtgtgggttccatgacc 303  Q
    |||| |||||||  |||||| ||||||||||  |  | |  || ||||||||||  || |||||||  |||||||||||||||||    
T  291026 ttgcggtgccttttgcaagatcataaaagctcactccctccacctctcttccacttgccgttgatgccgtgtgggttccatgacc 290942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 303
Target Start/End: Complemental strand, 267864 - 267758
Alignment:
Q  197 cttgaagaaggaactcctcctcttgcagtgccttcagcaagaccataaaagcttgcatctttgacttctcttccacccgcggttgatgttgtgtgggttc 296  Q
    |||||||| ||  |||| ||||||||||||||||  |||||||||||||||||| || | || || || ||||| || || || |||| |||||||||||    
T  267864 cttgaagatggtgctccacctcttgcagtgccttttgcaagaccataaaagcttacacccttcacctcacttccgccggctgtcgatgatgtgtgggttc 267765  T
Q  297 catgacc 303  Q
    |||||||    
T  267764 catgacc 267758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 303
Target Start/End: Original strand, 648057 - 648163
Alignment:
Q  197 cttgaagaaggaactcctcctcttgcagtgccttcagcaagaccataaaagcttgcatctttgacttctcttccacccgcggttgatgttgtgtgggttc 296  Q
    |||||||| ||  |||| ||||||||||||||||  |||||||||||||||||| || | || || || ||||| || || || |||| |||||||||||    
T  648057 cttgaagatggtgctccacctcttgcagtgccttttgcaagaccataaaagcttacacccttcacctcacttccgccggctgtcgatgatgtgtgggttc 648156  T
Q  297 catgacc 303  Q
    |||||||    
T  648157 catgacc 648163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 303
Target Start/End: Original strand, 833792 - 833898
Alignment:
Q  197 cttgaagaaggaactcctcctcttgcagtgccttcagcaagaccataaaagcttgcatctttgacttctcttccacccgcggttgatgttgtgtgggttc 296  Q
    |||||||| ||  |||| ||||||||||||||||  |||||||||||||||||| || | || || || ||||| || || || |||| |||||||||||    
T  833792 cttgaagatggtgctccacctcttgcagtgccttttgcaagaccataaaagcttacacccttcacctcacttccgccggctgtcgatgatgtgtgggttc 833891  T
Q  297 catgacc 303  Q
    |||||||    
T  833892 catgacc 833898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 145
Target Start/End: Complemental strand, 267958 - 267916
Alignment:
Q  103 atcaactccatcagcaatggcatcatcaaatgcagctaaaata 145  Q
    ||||||||||||||||||||||||||| ||||||| |||||||    
T  267958 atcaactccatcagcaatggcatcatcgaatgcagataaaata 267916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 145
Target Start/End: Original strand, 647963 - 648005
Alignment:
Q  103 atcaactccatcagcaatggcatcatcaaatgcagctaaaata 145  Q
    ||||||||||||||||||||||||||| ||||||| |||||||    
T  647963 atcaactccatcagcaatggcatcatcgaatgcagataaaata 648005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 145
Target Start/End: Original strand, 833698 - 833740
Alignment:
Q  103 atcaactccatcagcaatggcatcatcaaatgcagctaaaata 145  Q
    ||||||||||||||||||||||||||| ||||||| |||||||    
T  833698 atcaactccatcagcaatggcatcatcgaatgcagataaaata 833740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 9e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 85 - 249
Target Start/End: Complemental strand, 29560172 - 29560008
Alignment:
Q  85 aatagatattgtgataatatcaactccatcagcaatggcatcatcaaatgcagctaaaatatcctcactactgcatctaccatcaccaccgcatactttg 184  Q
    |||||| || ||||| || ||||||||||||||||| |||||||||||||| ||||||||| | |||| ||||||| |||  |  || |  || | ||||    
T  29560172 aatagagatagtgatgatgtcaactccatcagcaattgcatcatcaaatgctgctaaaataacatcaccactgcatgtactgttgccgcgacaaattttg 29560073  T
Q  185 tatacagaagtccttgaagaaggaactcctcctcttgcagtgccttcagcaagaccataaaagct 249  Q
    |||  || | |||||||||| || ||||| |||||||||||||||| ||||||||||||||||||    
T  29560072 tatgtagcaatccttgaagatgggactccacctcttgcagtgcctttagcaagaccataaaagct 29560008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 104 - 303
Target Start/End: Complemental strand, 19387635 - 19387436
Alignment:
Q  104 tcaactccatcagcaatggcatcatcaaatgcagctaaaatatcctcactactgcatctaccatcaccaccgcatactttgtatacagaagtccttgaag 203  Q
    |||||||||||||||||||||||||||||||||||||| ||| | ||| || ||||| |||||  | ||  |||   ||||||| ||| | |||||||||    
T  19387635 tcaactccatcagcaatggcatcatcaaatgcagctaatatagcatcattagtgcatgtaccaaaatcattgcaacttttgtatgcagtaatccttgaag 19387536  T
Q  204 aaggaactcctcctcttgcagtgccttcagcaagaccataaaagcttgcatctttgacttctcttccacccgcggttgatgttgtgtgggttccatgacc 303  Q
    | || | ||| ||||||||| | || |  |||||||||||||||||  |||| || || || | ||||||  |  | |||| ||||||||||||||||||    
T  19387535 atgggattccacctcttgcaattccattcgcaagaccataaaagctcacatcattcacctcacgtccaccaactatggatgatgtgtgggttccatgacc 19387436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 303
Target Start/End: Complemental strand, 18598850 - 18598651
Alignment:
Q  104 tcaactccatcagcaatggcatcatcaaatgcagctaaaatatcctcactactgcatctaccatcaccaccgcatactttgtatacagaagtccttgaag 203  Q
    ||||||||||| |||||||||||||||||||||||||| | | | ||| || |||||  ||||  | ||  ||| | ||||||| ||  | |||||||||    
T  18598850 tcaactccatcggcaatggcatcatcaaatgcagctaatacaacatcattagtgcatgcaccaaaaacattgcaaattttgtatgcatcaatccttgaag 18598751  T
Q  204 aaggaactcctcctcttgcagtgccttcagcaagaccataaaagcttgcatctttgacttctcttccacccgcggttgatgttgtgtgggttccatgacc 303  Q
    | || | ||| ||||||||| | || |  || ||||||||||||||| |||| || || |||| |||||| ||  | |||| ||||||||||||||||||    
T  18598750 atgggattccacctcttgcaattccatttgcgagaccataaaagcttacatcattcacctctcgtccacctgctatggatgctgtgtgggttccatgacc 18598651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 95 - 304
Target Start/End: Complemental strand, 19822740 - 19822531
Alignment:
Q  95 gtgataatatcaactccatcagcaatggcatcatcaaatgcagctaaaatatcctcactactgcatctaccatcaccaccgcatactttgtatacagaag 194  Q
    ||||| || |||||||||||||||||||||||||||||||||||||| |||   |||  ||||||| ||  |         |||||||||||||||| |     
T  19822740 gtgatgatgtcaactccatcagcaatggcatcatcaaatgcagctaatatagagtcagaactgcatttaagacttgatatacatactttgtatacagcaa 19822641  T
Q  195 tccttgaagaaggaactcctcctcttgcagtgccttcagcaagaccataaaagcttgcatctttgacttctcttccacccgcggttgatgttgtgtgggt 294  Q
    | |||||||| || ||||| ||||||||||||||||  |||||||||||||||||  |||| || || |  |||||||| || ||||||| ||| ||||     
T  19822640 ttcttgaagatgggactccacctcttgcagtgccttttgcaagaccataaaagctgacatcattcacctgacttccacctgctgttgatgctgtatggga 19822541  T
Q  295 tccatgacct 304  Q
    ||||||||||    
T  19822540 tccatgacct 19822531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 303
Target Start/End: Complemental strand, 19887749 - 19887622
Alignment:
Q  176 catactttgtatacagaagtccttgaagaaggaactcctcctcttgcagtgccttcagcaagaccataaaagcttgcatctttgacttctcttccacccg 275  Q
    |||||||||||||||| | | |||||||| || ||||| ||||||||||||||||  |||||||||||||||||  |||| || || |  |||||||| |    
T  19887749 catactttgtatacagcaattcttgaagatgggactccacctcttgcagtgccttttgcaagaccataaaagctgacatcattcacctgacttccacctg 19887650  T
Q  276 cggttgatgttgtgtgggttccatgacc 303  Q
    | ||||||| ||| |||| |||||||||    
T  19887649 ctgttgatgctgtatgggatccatgacc 19887622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 95 - 145
Target Start/End: Complemental strand, 19887830 - 19887780
Alignment:
Q  95 gtgataatatcaactccatcagcaatggcatcatcaaatgcagctaaaata 145  Q
    ||||| || |||||||||||||||||||||||||||||||||||||| |||    
T  19887830 gtgatgatgtcaactccatcagcaatggcatcatcaaatgcagctaatata 19887780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 19822815 - 19822778
Alignment:
Q  20 tccatggcatgaaatgaaccaatggcaataggatcttg 57  Q
    |||||||||||||| |||||||||||||||| ||||||    
T  19822815 tccatggcatgaaaagaaccaatggcaatagtatcttg 19822778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 141
Target Start/End: Complemental strand, 18213922 - 18213884
Alignment:
Q  103 atcaactccatcagcaatggcatcatcaaatgcagctaa 141  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  18213922 atcaactccatcagcaatggcatcatcaaatgctgctaa 18213884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 300
Target Start/End: Original strand, 165774 - 165895
Alignment:
Q  179 actttgtatacagaagtccttgaagaaggaactcctcctcttgcagtgccttcagcaagaccataaaagcttgcatctttgacttctcttccacccgcgg 278  Q
    ||||||||| ||| | |||||||||| |||||||| ||||||||| | ||||  |||  ||||||||||||| || |||| || || | ||||||  |      
T  165774 actttgtatgcagcaatccttgaagatggaactccacctcttgcaattccttttgcataaccataaaagcttacacctttcacctcacgtccacctacta 165873  T
Q  279 ttgatgttgtgtgggttccatg 300  Q
    | ||||||||||||||||||||    
T  165874 tcgatgttgtgtgggttccatg 165895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 303
Target Start/End: Original strand, 140380 - 140504
Alignment:
Q  179 actttgtatacagaagtccttgaagaaggaactcctcctcttgcagtgccttcagcaagaccataaaagcttgcatctttgacttctcttccacccgcgg 278  Q
    ||||||||| ||| | |||||||||| |||||||| ||||||||| ||||||  |||  |||||||||||| ||| |||| || || | ||||||  |      
T  140380 actttgtatgcagcaatccttgaagatggaactccacctcttgcaatgccttttgcataaccataaaagctcgcaccttttacctcacgtccacctacta 140479  T
Q  279 ttgatgttgtgtgggttccatgacc 303  Q
    | |||| ||| ||||||||||||||    
T  140480 tcgatgatgtatgggttccatgacc 140504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 135
Target Start/End: Original strand, 165698 - 165730
Alignment:
Q  103 atcaactccatcagcaatggcatcatcaaatgc 135  Q
    |||||||||||||||||||||||||||||||||    
T  165698 atcaactccatcagcaatggcatcatcaaatgc 165730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 103 - 138
Target Start/End: Original strand, 140304 - 140339
Alignment:
Q  103 atcaactccatcagcaatggcatcatcaaatgcagc 138  Q
    ||||||||||||| ||||||||||||||||||||||    
T  140304 atcaactccatcatcaatggcatcatcaaatgcagc 140339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 303
Target Start/End: Complemental strand, 18213836 - 18213728
Alignment:
Q  195 tccttgaagaaggaactcctcctcttgcagtgccttcagcaagaccataaaagcttgcatctttgacttctcttccacccgcggttgatgttgtgtgggt 294  Q
    |||||||||| ||| |||| |||| |||| ||||||  |||| ||||||||||||  || |||| || || | ||||||  |  |||||| |||||||||    
T  18213836 tccttgaagatggagctccacctcgtgcaatgccttttgcaataccataaaagctcacacctttcacctcacgtccacctactattgatgatgtgtgggt 18213737  T
Q  295 tccatgacc 303  Q
    |||||||||    
T  18213736 tccatgacc 18213728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University