View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7784_low_9 (Length: 318)

Name: NF7784_low_9
Description: NF7784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7784_low_9
NF7784_low_9
[»] chr4 (6 HSPs)
chr4 (4-199)||(17345147-17345342)
chr4 (21-200)||(17139156-17139335)
chr4 (253-318)||(17345404-17345473)
chr4 (252-318)||(17139036-17139106)
chr4 (122-195)||(28942145-28942218)
chr4 (155-196)||(55294115-55294156)
[»] chr2 (1 HSPs)
chr2 (114-195)||(37092503-37092584)


Alignment Details
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 4 - 199
Target Start/End: Original strand, 17345147 - 17345342
Alignment:
Q  4 tttttgttttggttttgtcatttgagttggagaggtgagaaaaatctgaaaaatgggttacttcaaacaatgttttctcttgtttttggtagtgttactt 103  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||| |||||||||||||||    
T  17345147 ttttggttttgattttgtcatttgagttggagaggtgagaaaaatctgaaaaatgggttactccaaacaatgttatgtcttgttgttggtagtgttactt 17345246  T
Q  104 gttgcatgtgcaaatggagaagatccttataggttttataattggaatgttacatatggtgatatttatccacttggagttaaacaacaggtactt 199  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  17345247 gttgcatgtgcaaatggagaagatccttataggttttacaattggaatgttacatatggagatatttatccacttggagttaaacaacaggtactt 17345342  T

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Target: chr4; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 21 - 200
Target Start/End: Complemental strand, 17139335 - 17139156
Alignment:
Q  21 tcatttgagttggagaggtgagaaaaatctgaaaaatgggttacttcaaacaatgttttctcttgtttttggtagtgttacttgttgcatgtgcaaatgg 120  Q
    ||||||||||||||||| | ||||||| |||| |||||||||| || |||||||||| | |||| || ||||||||||||||||||||||||||||||||    
T  17139335 tcatttgagttggagagttaagaaaaaactgagaaatgggttatttaaaacaatgttctgtcttattgttggtagtgttacttgttgcatgtgcaaatgg 17139236  T
Q  121 agaagatccttataggttttataattggaatgttacatatggtgatatttatccacttggagttaaacaacaggtacttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17139235 agaagatccttataggttttataattggaatgttacatatggtgatatttatccacttggagttaaacaacaggtacttc 17139156  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 253 - 318
Target Start/End: Original strand, 17345404 - 17345473
Alignment:
Q  253 ttcataacattgagtttta----tttcttatgaatgaaattttgaagttttctcagattattagcggtgt 318  Q
    |||||||||||||||||||    ||||||||||||||||||| || ||||||||| ||||||||||||||    
T  17345404 ttcataacattgagttttacttctttcttatgaatgaaatttggatgttttctcaaattattagcggtgt 17345473  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 17139106 - 17139036
Alignment:
Q  252 cttcataacattgagttttatttctt----atgaatgaaattttgaagttttctcagattattagcggtgt 318  Q
    |||||||||||||||||||| |||||    |||||||||||||||| ||||| ||| ||||||||||||||    
T  17139106 cttcataacattgagttttacttcttccttatgaatgaaattttgatgttttatcaaattattagcggtgt 17139036  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 195
Target Start/End: Complemental strand, 28942218 - 28942145
Alignment:
Q  122 gaagatccttataggttttataattggaatgttacatatggtgatatttatccacttggagttaaacaacaggt 195  Q
    |||||||||||||| || | | | |||| | |||| |||||||| ||||||||||| || ||||||||||||||    
T  28942218 gaagatccttatagattctttgactggactattacttatggtgacatttatccactcggtgttaaacaacaggt 28942145  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 55294115 - 55294156
Alignment:
Q  155 acatatggtgatatttatccacttggagttaaacaacaggta 196  Q
    |||||||||||||| ||||| ||||| |||||||||||||||    
T  55294115 acatatggtgatatctatcctcttggtgttaaacaacaggta 55294156  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 114 - 195
Target Start/End: Complemental strand, 37092584 - 37092503
Alignment:
Q  114 caaatggagaagatccttataggttttataattggaatgttacatatggtgatatttatccacttggagttaaacaacaggt 195  Q
    ||||||||||||| ||||||||||| |||| |||||||||||| ||||| ||||||||||| ||||||||||||||||||||    
T  37092584 caaatggagaagacccttataggttctatacttggaatgttacctatggagatatttatcctcttggagttaaacaacaggt 37092503  T

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