View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7785_high_2 (Length: 710)
Name: NF7785_high_2
Description: NF7785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7785_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 484 - 691
Target Start/End: Original strand, 51376501 - 51376708
Alignment:
| Q |
484 |
attccagagatgatatagggcatattgcattaggcttaaacgccttacaaagttacccatcatcacaagtaaatgagacaaactgataaaatacgcaagg |
583 |
Q |
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| T |
51376501 |
attccagagatgatatagggcatattgcattaggcttaaacgccttacaaagttacccatcatcacaagtaaatgagacaaactcataaaatacgcaagg |
51376600 |
T |
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| Q |
584 |
tacatatttttaactttcaagcatttgacattaatctttaagttttgagcatcaaacattaaatttgtaattatcaaatacgcattgtgaccacattgat |
683 |
Q |
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| T |
51376601 |
tacatatttttaactttcaagcatttgacattaatctttaagtttcgagcatcaaacattaaatttgtaattatcaaatacgcattgtgaccgcattgat |
51376700 |
T |
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| Q |
684 |
gtctctca |
691 |
Q |
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|||||||| |
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| T |
51376701 |
gtctctca |
51376708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 247 - 460
Target Start/End: Original strand, 51376286 - 51376503
Alignment:
| Q |
247 |
actcagaaacgagaatagcatacataaactccatcattcatgacagcccacctagcattttccctattccattgaacaatggctccattggatacaacaa |
346 |
Q |
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| T |
51376286 |
actcagaaacgagaatagcatacataaactccatcattcatgacagcccacctagcattttccctatcccattgaacaatggctccattagatacaacaa |
51376385 |
T |
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| Q |
347 |
a----gataccagtgccaaagccatatggaccaccctttttggataatatttgtttactttccaatgacccaagcttctcttaccaagccattgaaattt |
442 |
Q |
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| T |
51376386 |
attaagataccagtgccaaagccatatggaccaccctttttggatattatttgtttactttccaatggcccaagcttctcttactaagccattgaaattt |
51376485 |
T |
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| Q |
443 |
gaatgcctaaatcagatt |
460 |
Q |
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| T |
51376486 |
gaatgcctaaatcagatt |
51376503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 148 - 205
Target Start/End: Original strand, 51376229 - 51376286
Alignment:
| Q |
148 |
tttccaatcctcttttagtcatttacataagtgttccttcaatacctattacctatga |
205 |
Q |
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| T |
51376229 |
tttccaatcctcttttattcatttacagaagtgttccttcaatacctattacctatga |
51376286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 284 - 364
Target Start/End: Complemental strand, 51850302 - 51850221
Alignment:
| Q |
284 |
tcatgacagcccacctagcattttccc-tattccattgaacaatggctccattggatacaacaaagataccagtgccaaagc |
364 |
Q |
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| T |
51850302 |
tcatgacagcccacatagcattttcccctatccctttgaacaatggctccattagatacaacaaagatacaagtgtcaaagc |
51850221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 284 - 364
Target Start/End: Complemental strand, 51820752 - 51820671
Alignment:
| Q |
284 |
tcatgacagcccacctagcattt-tccctattccattgaacaatggctccattggatacaacaaagataccagtgccaaagc |
364 |
Q |
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| T |
51820752 |
tcatgacagcccacatagcatttgatcctatccctttgaacaaaggttccattagatacagcaaagatactagtgctaaagc |
51820671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 130
Target Start/End: Complemental strand, 51821074 - 51821029
Alignment:
| Q |
85 |
caagagtcaaatttctttcatgatggaataaaggcttacctaaaag |
130 |
Q |
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| T |
51821074 |
caagagtcaattttctttcatgatataataaagacttacctaaaag |
51821029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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