View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7785_high_3 (Length: 613)
Name: NF7785_high_3
Description: NF7785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7785_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 15 - 561
Target Start/End: Original strand, 43919871 - 43920417
Alignment:
| Q |
15 |
agagggatctgtttcaatgctactatataatcatgaaccacagtttccgacattaacatctgacccaaacacgtcgaccgatacatatttgtttgaaaag |
114 |
Q |
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| T |
43919871 |
agagggatctgtttcaatgctactatttaatcatgaaccacagtttccgacattaacatctgacccaaacacgtcgaccgatacatatttgtttgaaaag |
43919970 |
T |
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| Q |
115 |
aacaagggaaaagggtgtgaagaagatttaaacacaacctcagtttcaacttctctctttggctccaagtcacatttgtttgctaccaatgccatcacca |
214 |
Q |
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| T |
43919971 |
aacaagggaaaagggtgtgaagaagatttaaacacaacctcagtttcaacttctctctttggctccaagtcacatttgtttgctaccaatgccatcacca |
43920070 |
T |
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| Q |
215 |
acttctgacttcctacaacatgtggttatatagttatactcaaatatatataagctttacaaaaatactgataaaagatcgaaacaaaacatgttactaa |
314 |
Q |
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| T |
43920071 |
acttctgacttcctacaacatgtggttatatagttatactcaaatagatataagctttacaaaaatactgataaaagatcgaaacaaaacatgttactaa |
43920170 |
T |
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| Q |
315 |
tgcacatgaattgctatcacagttttaaatttcctgtgtttgaggtattaccatgtctttgcaattcttgaacccattttttcgctcgaacaaatgtgtc |
414 |
Q |
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| T |
43920171 |
tgcacatgaattgctatcacagttttaaatttcctgtgtttgaggtattaccatgtctttgcaattcctgaacccattttttcgctcgaacaaatgtgtc |
43920270 |
T |
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| Q |
415 |
ctgaaatagaaatttggatcataaacaacattgtcgatcgttttcaaatataacaagatgaatacttacaatgctagagatgtcataaacaacaattgct |
514 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43920271 |
ctgaaatagaaatttggatcataaacaacattgttgatcgttttcaaatataacaaaatgaatacttacaatgctagagatgtcataaacaacaattgct |
43920370 |
T |
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| Q |
515 |
gctgcggcaccgcggtaatacataggagccaaactatgatatcgttc |
561 |
Q |
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| T |
43920371 |
gctgcggcaccgcggtaatacataggagccaaactatgatatcgttc |
43920417 |
T |
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