View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7785_high_6 (Length: 358)

Name: NF7785_high_6
Description: NF7785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7785_high_6
NF7785_high_6
[»] chr5 (18 HSPs)
chr5 (133-333)||(33904573-33904773)
chr5 (152-317)||(33763363-33763528)
chr5 (153-307)||(33734534-33734688)
chr5 (160-295)||(33867039-33867174)
chr5 (151-295)||(33749004-33749148)
chr5 (166-296)||(33698707-33698837)
chr5 (151-295)||(33821799-33821943)
chr5 (16-68)||(33904423-33904475)
chr5 (16-67)||(33679843-33679894)
chr5 (16-67)||(33698560-33698611)
chr5 (16-67)||(33734331-33734382)
chr5 (16-67)||(33865914-33865965)
chr5 (16-66)||(33762793-33762843)
chr5 (16-67)||(33821661-33821712)
chr5 (175-295)||(33680120-33680240)
chr5 (16-67)||(33748803-33748854)
chr5 (16-67)||(33834923-33834974)
chr5 (178-234)||(33846626-33846682)
[»] scaffold0001 (2 HSPs)
scaffold0001 (159-332)||(149000-149173)
scaffold0001 (17-68)||(148809-148860)
[»] chr7 (2 HSPs)
chr7 (134-296)||(5470128-5470290)
chr7 (22-68)||(5471193-5471239)
[»] chr8 (2 HSPs)
chr8 (155-296)||(21306037-21306178)
chr8 (16-67)||(21305899-21305950)
[»] scaffold0247 (2 HSPs)
scaffold0247 (149-298)||(21871-22020)
scaffold0247 (16-66)||(22155-22205)
[»] scaffold0023 (2 HSPs)
scaffold0023 (175-298)||(90068-90191)
scaffold0023 (17-67)||(114207-114257)
[»] scaffold0193 (3 HSPs)
scaffold0193 (149-298)||(24286-24435)
scaffold0193 (16-67)||(25218-25269)
scaffold0193 (229-298)||(24882-24953)


Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 133 - 333
Target Start/End: Original strand, 33904573 - 33904773
Alignment:
Q  133 atgaatattaacttgtccttggaagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttga 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33904573 atgaatattaacttgtccttggaagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttga 33904672  T
Q  233 tgttggggcttaaataatttaaccacctcaatctacagctttttcggcacctattcaatcctgtcatgtgtaacatataatttaagtagttatgcatggt 332  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  33904673 tgttgggggttaaataatttaaccacctcaatctacagctttttcggcacctattcaatcctgtcatgtgtaacatataatttaagcagttatgcatggt 33904772  T
Q  333 a 333  Q
    |    
T  33904773 a 33904773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 152 - 317
Target Start/End: Original strand, 33763363 - 33763528
Alignment:
Q  152 tggaagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatt 251  Q
    |||||| ||||||||| ||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33763363 tggaagcttacctattacctagaagtttttgtaaccttaggatcagatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatt 33763462  T
Q  252 taaccacctcaatctacagctttttcggcacctattcaatcctgtcatgtgtaacatataatttaa 317  Q
    |||||||||||||||||| ||||||||||| ||| ||||||||| || |||||||| ||| |||||    
T  33763463 taaccacctcaatctacaactttttcggcatctactcaatcctgccaagtgtaacaaatactttaa 33763528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 153 - 307
Target Start/End: Original strand, 33734534 - 33734688
Alignment:
Q  153 ggaagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataattt 252  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  33734534 ggaagcttacctattccctagaagtttgtgtaaccttaggatcatatcaacttcatcctcagcaaagctttcccttttgatgttagggcataaataattt 33734633  T
Q  253 aaccacctcaatctacagctttttcggcacctattcaatcctgtcatgtgtaaca 307  Q
    | ||||||||||||||| |||||||| || ||||||||||||| || ||||||||    
T  33734634 acccacctcaatctacaactttttcgacatctattcaatcctgccaagtgtaaca 33734688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 160 - 295
Target Start/End: Original strand, 33867039 - 33867174
Alignment:
Q  160 tacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatttaaccacc 259  Q
    ||||| ||||||| ||| |||||||||||||  |||||||||||||||||||||| ||| || || || |||||| ||||| ||||||||||||||||||    
T  33867039 tacctgttccctaaaagcttgtgtaaccttaaaatcatatcaacttcatcctcagaaaaactctctctattgatggtggggtttaaataatttaaccacc 33867138  T
Q  260 tcaatctacagctttttcggcacctattcaatcctg 295  Q
    |||||||||| ||||| |||||||||||||||||||    
T  33867139 tcaatctacaacttttccggcacctattcaatcctg 33867174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 151 - 295
Target Start/End: Original strand, 33749004 - 33749148
Alignment:
Q  151 ttggaagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataat 250  Q
    ||||||| |||||||||||| |  || ||||||||||| || ||||||||| |||||||||||| |||| |||| || |||||| | ||| |||||||||    
T  33749004 ttggaagcttacctattccccaagaggttgtgtaacctaaggatcatatcagcttcatcctcagaaaagatttctctgttgatggttgggtttaaataat 33749103  T
Q  251 ttaaccacctcaatctacagctttttcggcacctattcaatcctg 295  Q
    ||||||| ||||||||||| ||||||| ||||||||||| |||||    
T  33749104 ttaaccatctcaatctacaactttttctgcacctattcagtcctg 33749148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 166 - 296
Target Start/End: Original strand, 33698707 - 33698837
Alignment:
Q  166 ttccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatttaaccacctcaatc 265  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||| || || ||||| || |||||   |||| |||||||||| |||||||||||||    
T  33698707 ttccctagaagtttgtgtaaccttagaatcatatcaatttcatcctcggcgaaactttctctgttgattgcggggtttaaataattcaaccacctcaatc 33698806  T
Q  266 tacagctttttcggcacctattcaatcctgt 296  Q
    |||| ||||| || ||||||||||| |||||    
T  33698807 tacaacttttccgacacctattcaaacctgt 33698837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 151 - 295
Target Start/End: Original strand, 33821799 - 33821943
Alignment:
Q  151 ttggaagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataat 250  Q
    ||||||| |||||||||||| || || |||||||||||||  ||||||||| ||||||| || | || |||||| || || || || ||| |||||||||    
T  33821799 ttggaagcttacctattccccaggagattgtgtaaccttatgatcatatcagcttcatcttcggtaatgctttctctgttaatattagggtttaaataat 33821898  T
Q  251 ttaaccacctcaatctacagctttttcggcacctattcaatcctg 295  Q
    ||| ||||||||||||||| |||||||| || |||||||||||||    
T  33821899 ttacccacctcaatctacaactttttcgacatctattcaatcctg 33821943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 33904423 - 33904475
Alignment:
Q  16 cacatcattagctgttctacccggaagccttgcagcaatcaatgaccatctaa 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33904423 cacatcattagctgttctacccggaagccttgcagcaatcaatgaccatctaa 33904475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 33679843 - 33679894
Alignment:
Q  16 cacatcattagctgttctacccggaagccttgcagcaatcaatgaccatcta 67  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33679843 cacatcattagctgttctacccggaagcctcgcagcaatcaatgaccatcta 33679894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 33698560 - 33698611
Alignment:
Q  16 cacatcattagctgttctacccggaagccttgcagcaatcaatgaccatcta 67  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  33698560 cacatcattagctgtcctacccggaagccttgcagcaatcaaagaccatcta 33698611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 33734331 - 33734382
Alignment:
Q  16 cacatcattagctgttctacccggaagccttgcagcaatcaatgaccatcta 67  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  33734331 cacatcattagcagttctaccaggaagccttgcagcaatcaatgaccatcta 33734382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 33865914 - 33865965
Alignment:
Q  16 cacatcattagctgttctacccggaagccttgcagcaatcaatgaccatcta 67  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  33865914 cacatcattagctgttctacccgggagtcttgcagcaatcaatgaccatcta 33865965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 33762793 - 33762843
Alignment:
Q  16 cacatcattagctgttctacccggaagccttgcagcaatcaatgaccatct 66  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  33762793 cacatcattcgctgttctaccgggaagccttgcagcaatcaatgaccatct 33762843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 33821661 - 33821712
Alignment:
Q  16 cacatcattagctgttctacccggaagccttgcagcaatcaatgaccatcta 67  Q
    |||||||||||| |||||||  ||||||||||||||||||||||||||||||    
T  33821661 cacatcattagccgttctactaggaagccttgcagcaatcaatgaccatcta 33821712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 295
Target Start/End: Original strand, 33680120 - 33680240
Alignment:
Q  175 agtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatttaaccacctcaatctacagcttt 274  Q
    |||||||||| |||||| |||||||||| |||||| |  |  || ||||| || |||||    ||| |||||||||| | ||||||||||||||| ||||    
T  33680120 agtttgtgtagccttagaatcatatcaatttcatcatgggagaaactttctctattgattgcagggtttaaataattcacccacctcaatctacaacttt 33680219  T
Q  275 ttcggcacctattcaatcctg 295  Q
    | ||||| |||||||| ||||    
T  33680220 tccggcatctattcaaacctg 33680240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 33748803 - 33748854
Alignment:
Q  16 cacatcattagctgttctacccggaagccttgcagcaatcaatgaccatcta 67  Q
    |||||||||||||||||||||  |||| |||||||||||||| | |||||||    
T  33748803 cacatcattagctgttctaccttgaagtcttgcagcaatcaacgtccatcta 33748854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 33834923 - 33834974
Alignment:
Q  16 cacatcattagctgttctacccggaagccttgcagcaatcaatgaccatcta 67  Q
    |||||||||||||||||||||  |||| |||||||||||||| | |||||||    
T  33834923 cacatcattagctgttctaccttgaagtcttgcagcaatcaacgtccatcta 33834974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 33846626 - 33846682
Alignment:
Q  178 ttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatg 234  Q
    ||||||||||| || ||||||||| |||||||||||| |||| |||| || ||||||    
T  33846626 ttgtgtaacctaaggatcatatcagcttcatcctcagaaaagatttctctgttgatg 33846682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 159 - 332
Target Start/End: Original strand, 149000 - 149173
Alignment:
Q  159 ttacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatttaaccac 258  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  149000 ttacctattccctagaagtttgtgtaaccttaggatcatatcgacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatttaaccac 149099  T
Q  259 ctcaatctacagctttttcggcacctattcaatcctgtcatgtgtaacatataatttaagtagttatgcatggt 332  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  149100 ctcaatctacagcttttgcggcacctattcaattctgtcatgtgtaacatataatttaagtaattatgcatggt 149173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 148809 - 148860
Alignment:
Q  17 acatcattagctgttctacccggaagccttgcagcaatcaatgaccatctaa 68  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  148809 acatcattagctgttcttcccggaagccttccagcaatcaatgaccatctaa 148860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 134 - 296
Target Start/End: Complemental strand, 5470290 - 5470128
Alignment:
Q  134 tgaatattaacttgtccttggaagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgat 233  Q
    ||||| |||| ||| ||| ||||| ||||||||| ||||  ||||||||||||||||| |||||||||||||||||||||| ||||||||  || |||||    
T  5470290 tgaattttaatttggcctcggaagcttacctatttcctaagagtttgtgtaaccttaggatcatatcaacttcatcctcagaaaagctttttctattgat 5470191  T
Q  234 gttggggcttaaataatttaaccacctcaatctacagctttttcggcacctattcaatcctgt 296  Q
    ||||||  |||||||||||| ||||||||||||||| |||||||| || ||||||||||||||    
T  5470190 gttgggctttaaataatttatccacctcaatctacaactttttcgacatctattcaatcctgt 5470128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 5471239 - 5471193
Alignment:
Q  22 attagctgttctacccggaagccttgcagcaatcaatgaccatctaa 68  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||    
T  5471239 attagctgttctacccggaagccttccagcaatcaatgaccatctaa 5471193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 155 - 296
Target Start/End: Original strand, 21306037 - 21306178
Alignment:
Q  155 aagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatttaa 254  Q
    ||||||||||||| ||||| ||||||||||||||||| |||| |||  |||||||||||| ||| ||| | || ||||||||||||||||| ||||||||    
T  21306037 aagattacctatttcctagtagtttgtgtaaccttaggatcaaatcttcttcatcctcagaaaatcttcctctgttgatgttggggcttaagtaatttaa 21306136  T
Q  255 ccacctcaatctacagctttttcggcacctattcaatcctgt 296  Q
    ||||||||||||||| ||||||| ||| ||||||||||||||    
T  21306137 ccacctcaatctacaactttttctgcatctattcaatcctgt 21306178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 21305899 - 21305950
Alignment:
Q  16 cacatcattagctgttctacccggaagccttgcagcaatcaatgaccatcta 67  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  21305899 cacatcattagctgttctacccggaagccttccagcaatcaatgaccatcta 21305950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 149 - 298
Target Start/End: Complemental strand, 22020 - 21871
Alignment:
Q  149 ccttggaagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaata 248  Q
    |||| |||| ||||||||| |||||||| |||||||||||||| |||| |||||||||||||| || |||  | ||||| ||||||| |||  |||||||    
T  22020 cctttgaagcttacctattgcctagaaggttgtgtaaccttagaatcaaatcaacttcatccttagaaaaattctccctgttgatgtagggatttaaata 21921  T
Q  249 atttaaccacctcaatctacagctttttcggcacctattcaatcctgtca 298  Q
    ||||| ||||||||||||||| |||||||| || ||||||||||||||||    
T  21920 atttacccacctcaatctacaactttttcgacatctattcaatcctgtca 21871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 22205 - 22155
Alignment:
Q  16 cacatcattagctgttctacccggaagccttgcagcaatcaatgaccatct 66  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  22205 cacatcattagctgttctacctggaagccttccagcaatcaatgaccatct 22155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 175 - 298
Target Start/End: Complemental strand, 90191 - 90068
Alignment:
Q  175 agtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatttaaccacctcaatctacagcttt 274  Q
    ||||| ||||||||||| |||||||||||||||||||||| ||| |||||  | |||||| | ||| ||||||| || |||||||| |||||||| ||||    
T  90191 agtttttgtaaccttaggatcatatcaacttcatcctcagaaaatctttctttgttgatggttgggtttaaatagttaaaccaccttaatctacaacttt 90092  T
Q  275 ttcggcacctattcaatcctgtca 298  Q
    |||| |||||||| ||||||||||    
T  90091 ttcgacacctatttaatcctgtca 90068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 114257 - 114207
Alignment:
Q  17 acatcattagctgttctacccggaagccttgcagcaatcaatgaccatcta 67  Q
    |||||||||||||||||| ||||||||||| | ||||||||||||||||||    
T  114257 acatcattagctgttctagccggaagccttcccgcaatcaatgaccatcta 114207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 149 - 298
Target Start/End: Complemental strand, 24435 - 24286
Alignment:
Q  149 ccttggaagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaata 248  Q
    ||||||| | ||||||||||||||| || |||||||||||||  || | |||| ||||||||| || ||||   ||||| |||||||  ||| |||||||    
T  24435 ccttggacgcttacctattccctaggaggttgtgtaaccttaaaattaaatcagcttcatccttagaaaagtcctccctgttgatgtaagggtttaaata 24336  T
Q  249 atttaaccacctcaatctacagctttttcggcacctattcaatcctgtca 298  Q
    ||||| ||| || |||||||| |||||||| |||||||||||||||||||    
T  24335 atttacccatcttaatctacaactttttcgacacctattcaatcctgtca 24286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 25269 - 25218
Alignment:
Q  16 cacatcattagctgttctacccggaagccttgcagcaatcaatgaccatcta 67  Q
    |||||||||||||| ||||||| |||| |||||||||||||||| |||||||    
T  25269 cacatcattagctgatctaccctgaagtcttgcagcaatcaatgtccatcta 25218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 298
Target Start/End: Complemental strand, 24953 - 24882
Alignment:
Q  229 ttgatgttggggcttaaataatttaac--cacctcaatctacagctttttcggcacctattcaatcctgtca 298  Q
    |||||| ||||| ||||||||||||||  ||||||| ||||||  ||| ||| ||||||||||||| |||||    
T  24953 ttgatggtggggtttaaataatttaaccacacctcagtctacaattttatcgacacctattcaatcatgtca 24882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University