View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7785_low_1 (Length: 794)
Name: NF7785_low_1
Description: NF7785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7785_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 22 - 607
Target Start/End: Complemental strand, 51311330 - 51310735
Alignment:
| Q |
22 |
cccaattcagattcaacgttctccctcccca---------tcttccaacgattgagagcatgttacattacatcacctgtcctttacccactcctccttg |
112 |
Q |
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| T |
51311330 |
cccaattcagattcaacgttctccctccccaatcccatcatcttccaacgattgagagcatgttacatcacctgtccttta-tttacccactcctccttg |
51311232 |
T |
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| Q |
113 |
gataatgggatagtggatacgaaaagagcagttcgaactttcatctgcaaa-----gtcccctccctcctttttattctccaaaaagaagaaaatattga |
207 |
Q |
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| T |
51311231 |
gataatgggatagtggatacgcaaagagcagttcgaactttcatctgcaaattaaagtcccctccctcctttttattctccaaaaagaagaaaagattga |
51311132 |
T |
|
| Q |
208 |
cttcccttcaacaattttggttatcagttatcacccaaggggcaaaagccat---ttgtaagtcttcttgttccaatgcaacaagtcttctgtaaattaa |
304 |
Q |
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| T |
51311131 |
cttccctg------------------gttatcacccaaggggcaaaagccatatattgtaagtcttcttgttccaatgcaacaagtcttctgtaaattaa |
51311050 |
T |
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| Q |
305 |
attgaagagtggagcacaagctccaaatagataagaaaaattaacctttgcgtgtattgtaatg-------ta-ataataaagcgttctacatggtttac |
396 |
Q |
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| T |
51311049 |
attgaagagtggagcacaagctccaaatagataagaaaaattaacctttgcgtgtattttaggggtcttgctatataataaagcgtgctacatggtttac |
51310950 |
T |
|
| Q |
397 |
cact----attcctcaaaggatccaagtttgcaagttaagttaatgaaattcccttcccttcgtcatacccattctttgtaattccttcacgtatccaca |
492 |
Q |
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| T |
51310949 |
cactcactattcctcaaaggatccaagtttgcaagttaagttaatgaaattcccttcccttcgtcatacccattctttgtaattccttcacgtatccaca |
51310850 |
T |
|
| Q |
493 |
aagaatcccaaaccacgattcataataacatattcttatccaaaaaactatattcttcacacaaaaccgttcctcattctttggaaatggagtctgttgc |
592 |
Q |
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| T |
51310849 |
aagaatcccaaaccacgattcataataacatattcttatccaaaaaactatattcttcacacaaaaccgttcctcattctttggaaatggagtctgttgc |
51310750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 164; Significance: 3e-87; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 594 - 778
Target Start/End: Complemental strand, 35047558 - 35047374
Alignment:
| Q |
594 |
tccaattccaattccaattcaacaactttttcattcaactatgttatttcattatcctttcnnnnnnnggttacttgggtctcaagttttctaagccaaa |
693 |
Q |
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| T |
35047558 |
tccaattccaattccaattcaacaactttttcattcaactatgttatttcattatcctttctttttttggttacttgggtctcaagttttctaagccaaa |
35047459 |
T |
|
| Q |
694 |
aacttctgttaaaccaaaagactttgatctattttacacttctgtttctgcttccactgtttctagcatgacatcaatagaaatg |
778 |
Q |
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| T |
35047458 |
aacttctgttaaaccaaaagactttgatctattttacacttctgtttctgcttccactgtttctagcatgacatcaatagaaatg |
35047374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 605 - 778
Target Start/End: Complemental strand, 35001182 - 35001009
Alignment:
| Q |
605 |
ttccaattcaacaactttttcattcaactatgttatttcattatcctttcnnnnnnnggttacttgggtctcaagttttctaagccaaaaacttctgtta |
704 |
Q |
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| T |
35001182 |
ttccaattcaaccattttttcattcacctcttttattacattatcctttctctctttggttacttgggtctcaagttttcaaagccaaggtcttctgtta |
35001083 |
T |
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| Q |
705 |
aaccaaaagactttgatctattttacacttctgtttctgcttccactgtttctagcatgacatcaatagaaatg |
778 |
Q |
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| T |
35001082 |
gacaaaaagactttgatctattttacacttcggtttctgcttccactgtttctagcatgacatccatagaaatg |
35001009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 609 - 692
Target Start/End: Original strand, 2414446 - 2414529
Alignment:
| Q |
609 |
aattcaacaactttttcattcaactatgttatttcattatcctttcnnnnnnnggttacttgggtctcaagttttctaagccaa |
692 |
Q |
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||||||||||||| ||||||||||| | ||||||||||||| |||| |||||||||||||||| |||||| ||||||| |
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| T |
2414446 |
aattcaacaacttgttcattcaactcttttatttcattatcatttctctctttggttacttgggtctcatgttttcaaagccaa |
2414529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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