View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7785_low_14 (Length: 299)
Name: NF7785_low_14
Description: NF7785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7785_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 15 - 225
Target Start/End: Original strand, 38367227 - 38367437
Alignment:
| Q |
15 |
tcgtgttcttaaaattgtacttattgtgataattatggtgaaaatgttggacaccaaactgtattgatgttatgtttaatgatatgagatgagtttgctt |
114 |
Q |
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| T |
38367227 |
tcgtgttcttaaaattgtacttattgtgataattatggtgaaaatgttggaccccaaactgtattgatgttatgtttaatgatatgagatgagtttgctt |
38367326 |
T |
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| Q |
115 |
ttgtcaaaaaagtatgtaattgattcataattaaattattaatacatcacatcaaactaagtgccttgaagttacaactattaagctagcacctaatgtt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38367327 |
ttgtcaaaaaagtatgtaattgattcataattaaattattaatacatcacatcaaactaagtgccttgaagttacaactattaagctagcacctaatgtt |
38367426 |
T |
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| Q |
215 |
aaaactatata |
225 |
Q |
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||||||||||| |
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| T |
38367427 |
aaaactatata |
38367437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 38367684 - 38367761
Alignment:
| Q |
222 |
tataacttacttcaaaatatgcttactgtataacaataaattatggatatgattcatgacgtttgcattagaataaat |
299 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38367684 |
tataacttacttcaaaatatgcttactatataacaataaattatggatatgattcatgacgtttgcattagaataaat |
38367761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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