View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7785_low_16 (Length: 261)
Name: NF7785_low_16
Description: NF7785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7785_low_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 36513447 - 36513680
Alignment:
| Q |
16 |
acaaactccttcaacaatatcctataaatacaataaaatatcaaatgattaatatagtgaaaaaagcatttaacaaagtacatgagaaatcaagaatgat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
36513447 |
acaaactccttcaacaatatcctataaatacaataaaatatcaaatgattaatatagtgaaaaaagcatttaacaaagtatatgagaaatcaagaatgat |
36513546 |
T |
|
| Q |
116 |
taccatgattacacctccagcttcagcttggctacctagatcaacacctccagcatctccctatatatgagaaatcaagaaaattaagttagaactgaaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36513547 |
taccatgattacacctccagcttcagcttggctacctagatcaacacctccagcatctccctatatatgagaaatcaagaaaattaagttagaactgaaa |
36513646 |
T |
|
| Q |
216 |
attaatatatatattgggggccattggttgatat |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
36513647 |
attaatatatatattgggggccattggttgatat |
36513680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 4234396 - 4234171
Alignment:
| Q |
16 |
acaaactccttcaacaatatcctataaatacaataaaatatcaaatgattaatatagtgaaaaaagcatttaacaaagtacatgagaaatcaagaatgat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
4234396 |
acaaactccttcaacaatatcctataaatacaataaaatatcaaatgattaatatagtgaaaaaagcatttaacaaagaatatgagaaatcaagaatgat |
4234297 |
T |
|
| Q |
116 |
taccatgattacacctccagcttcagcttggctacctagatcaacacctccagcatctccctatatatgagaaatcaagaaaattaagttagaactgaaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4234296 |
taccatgattacacctccagcttcagcttggctacctagatcaacacctccagcatctccctatatatgagaaatcaagaaaattaagttagaaatgaaa |
4234197 |
T |
|
| Q |
216 |
attaatatatatattgggggccattg |
241 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
4234196 |
attaatatatatattgggggccattg |
4234171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University