View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7785_low_17 (Length: 251)
Name: NF7785_low_17
Description: NF7785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7785_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 10 - 234
Target Start/End: Original strand, 41204007 - 41204231
Alignment:
| Q |
10 |
aagaatatcatacccaaaggcgtcgaagattaggacaatgaacaagaagatcagtaagatcttcactgtcaacaagagcataactaaaattcaagaaagt |
109 |
Q |
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| T |
41204007 |
aagaaaatcatacccaaaggcgtcgaagattaggacaatgaacaagaagatcagtaagatcttcactgtcaacaagagcataactaaaattcaagaaagt |
41204106 |
T |
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| Q |
110 |
cagatttgtgcatgcagagtatagaacttggagttggatatactgtgctgatgctgaagccacccataaaccagaaagggtgtgaagactcttacaattt |
209 |
Q |
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| T |
41204107 |
cagatttgtgcatgcagagtatagaacttggagttggatatactgtgctgatgctgaagccacccataaaccagaaagggtgtgaagactcttacaattt |
41204206 |
T |
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| Q |
210 |
ttgaacgcactttcgagctctaaat |
234 |
Q |
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|||||||| |||||||||||||||| |
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| T |
41204207 |
ttgaacgcgctttcgagctctaaat |
41204231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 10 - 230
Target Start/End: Complemental strand, 36146341 - 36146133
Alignment:
| Q |
10 |
aagaatatcatacccaaaggcgtcgaagattaggacaatgaacaagaagatcagtaagatcttcactgtcaacaagagcataactaaaattcaagaaagt |
109 |
Q |
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| T |
36146341 |
aagaaaatcatacccaaaggcgtcgaagattaggacagcgaacaagaagcttagaaaggccttcactgtcaagaggagcataactaaaattcaagaaagt |
36146242 |
T |
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| Q |
110 |
cagatttgtgcatgcagagtatagaacttggagttggatatactgtgctgatgctgaagccacccataaaccagaaagggtgtgaagactcttacaattt |
209 |
Q |
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| T |
36146241 |
cagatttgtgcatacagggtatagaacttggtg------atattg------tgctgaagcaacccataaaccagaaagggtgtgaagacttctacaattg |
36146154 |
T |
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| Q |
210 |
ttgaacgcactttcgagctct |
230 |
Q |
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|||||||| | ||| |||||| |
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| T |
36146153 |
ttgaacgcgcgttcaagctct |
36146133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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