View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7785_low_2 (Length: 759)

Name: NF7785_low_2
Description: NF7785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7785_low_2
NF7785_low_2
[»] chr5 (25 HSPs)
chr5 (133-557)||(33904573-33904998)
chr5 (570-745)||(33905664-33905840)
chr5 (152-317)||(33763363-33763528)
chr5 (153-307)||(33734534-33734688)
chr5 (406-516)||(33867303-33867413)
chr5 (406-530)||(33736435-33736559)
chr5 (160-295)||(33867039-33867174)
chr5 (422-530)||(33698933-33699041)
chr5 (151-295)||(33749004-33749148)
chr5 (407-502)||(33763706-33763801)
chr5 (166-296)||(33698707-33698837)
chr5 (400-509)||(33823135-33823244)
chr5 (408-530)||(33680385-33680507)
chr5 (151-295)||(33821799-33821943)
chr5 (16-68)||(33904423-33904475)
chr5 (399-508)||(33750168-33750277)
chr5 (16-67)||(33679843-33679894)
chr5 (16-67)||(33698560-33698611)
chr5 (16-67)||(33734331-33734382)
chr5 (16-67)||(33865914-33865965)
chr5 (16-66)||(33762793-33762843)
chr5 (16-67)||(33821661-33821712)
chr5 (175-295)||(33680120-33680240)
chr5 (16-67)||(33748803-33748854)
chr5 (16-67)||(33834923-33834974)
[»] scaffold0001 (3 HSPs)
scaffold0001 (159-541)||(149000-149384)
scaffold0001 (17-68)||(148809-148860)
scaffold0001 (568-614)||(149439-149485)
[»] chr7 (3 HSPs)
chr7 (134-296)||(5470128-5470290)
chr7 (409-519)||(5468519-5468629)
chr7 (22-68)||(5471193-5471239)
[»] chr8 (3 HSPs)
chr8 (155-296)||(21306037-21306178)
chr8 (16-67)||(21305899-21305950)
chr8 (422-530)||(21306329-21306437)
[»] scaffold0247 (3 HSPs)
scaffold0247 (149-298)||(21871-22020)
scaffold0247 (16-66)||(22155-22205)
scaffold0247 (399-513)||(19846-19960)
[»] scaffold0023 (3 HSPs)
scaffold0023 (175-298)||(90068-90191)
scaffold0023 (406-519)||(88879-88992)
scaffold0023 (17-67)||(114207-114257)
[»] scaffold0193 (3 HSPs)
scaffold0193 (149-298)||(24286-24435)
scaffold0193 (399-513)||(23294-23408)
scaffold0193 (16-67)||(25218-25269)


Alignment Details
Target: chr5 (Bit Score: 377; Significance: 0; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 133 - 557
Target Start/End: Original strand, 33904573 - 33904998
Alignment:
Q  133 atgaatattaacttgtccttggaagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttga 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33904573 atgaatattaacttgtccttggaagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttga 33904672  T
Q  233 tgttggggcttaaataatttaaccacctcaatctacagctttttcggcacctattcaatcctgtcatgtgtaacatataatttaagtagttatgcatggt 332  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  33904673 tgttgggggttaaataatttaaccacctcaatctacagctttttcggcacctattcaatcctgtcatgtgtaacatataatttaagcagttatgcatggt 33904772  T
Q  333 annnnnnn-gcatttgctttgatatatagttgttcaatttaactaattgtaagcctaaaataaacggcattcattatacctgctctttgtggaactaaat 431  Q
    |        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33904773 aatttttttgcatttgctttgatatatagttgttcaatttaactaattgtaagcctaaaataaacggcattcattatacctgctctttgtggaactaaat 33904872  T
Q  432 gccattttccttcaccatacttctgtatacaagccttgagtagcttatcttcctcatatgtccatgcaccttttctcacgcctctggtcatctccatatt 531  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33904873 gccattttccttcaccatacttctgtatacaagccttgagtagcttgtcttcctcatatgtccatgcaccttttctcacgcctctggtcatctccatatt 33904972  T
Q  532 taaatttcctttattgtacatagaca 557  Q
    ||| ||||||||||||| ||||||||    
T  33904973 taactttcctttattgtccatagaca 33904998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 570 - 745
Target Start/End: Original strand, 33905664 - 33905840
Alignment:
Q  570 tatatttatgcatacatgtgttaatgttgcgtaaaaagacaaagg-aatgatacacgaagaatacaataatccatatgtttctacttataagattcttaa 668  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  33905664 tatatttatgcatacatgtgttaatgttgcgtaaaaagacaaagggaatgatacacgaagaatacaatactccatatgtttctatttataagattcttaa 33905763  T
Q  669 agnnnnnnnttgaggaaatatattaagaaaagtaagtagtgtcattaatgtgtatgggtgaattcgacaactccaaa 745  Q
    ||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33905764 agaaaaaaattgaggaaatatattaagaaaagtaagtagtgtcattaatgtgtatgggtgaattcgacaactccaaa 33905840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 152 - 317
Target Start/End: Original strand, 33763363 - 33763528
Alignment:
Q  152 tggaagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatt 251  Q
    |||||| ||||||||| ||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33763363 tggaagcttacctattacctagaagtttttgtaaccttaggatcagatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatt 33763462  T
Q  252 taaccacctcaatctacagctttttcggcacctattcaatcctgtcatgtgtaacatataatttaa 317  Q
    |||||||||||||||||| ||||||||||| ||| ||||||||| || |||||||| ||| |||||    
T  33763463 taaccacctcaatctacaactttttcggcatctactcaatcctgccaagtgtaacaaatactttaa 33763528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 153 - 307
Target Start/End: Original strand, 33734534 - 33734688
Alignment:
Q  153 ggaagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataattt 252  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  33734534 ggaagcttacctattccctagaagtttgtgtaaccttaggatcatatcaacttcatcctcagcaaagctttcccttttgatgttagggcataaataattt 33734633  T
Q  253 aaccacctcaatctacagctttttcggcacctattcaatcctgtcatgtgtaaca 307  Q
    | ||||||||||||||| |||||||| || ||||||||||||| || ||||||||    
T  33734634 acccacctcaatctacaactttttcgacatctattcaatcctgccaagtgtaaca 33734688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 406 - 516
Target Start/End: Original strand, 33867303 - 33867413
Alignment:
Q  406 tatacctgctctttgtggaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttatcttcctcatatgtccatgcacctttt 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  33867303 tatacctgctctttgtggaactaaatgccattttccttcaccatacttctgcatacaagccttgagtagcttgtcttcctcatatgtccatgcacctttt 33867402  T
Q  506 ctcacgcctct 516  Q
    ||||| |||||    
T  33867403 ctcacacctct 33867413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 406 - 530
Target Start/End: Original strand, 33736435 - 33736559
Alignment:
Q  406 tatacctgctctttgtggaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttatcttcctcatatgtccatgcacctttt 505  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  33736435 tatacctgctctttgagaaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttgtcttcctcatatgtccatgcacctttt 33736534  T
Q  506 ctcacgcctctggtcatctccatat 530  Q
    ||||  | ||| ||| |||||||||    
T  33736535 ctcaaacttctagtcttctccatat 33736559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 160 - 295
Target Start/End: Original strand, 33867039 - 33867174
Alignment:
Q  160 tacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatttaaccacc 259  Q
    ||||| ||||||| ||| |||||||||||||  |||||||||||||||||||||| ||| || || || |||||| ||||| ||||||||||||||||||    
T  33867039 tacctgttccctaaaagcttgtgtaaccttaaaatcatatcaacttcatcctcagaaaaactctctctattgatggtggggtttaaataatttaaccacc 33867138  T
Q  260 tcaatctacagctttttcggcacctattcaatcctg 295  Q
    |||||||||| ||||| |||||||||||||||||||    
T  33867139 tcaatctacaacttttccggcacctattcaatcctg 33867174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 422 - 530
Target Start/End: Original strand, 33698933 - 33699041
Alignment:
Q  422 ggaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttatcttcctcatatgtccatgcaccttttctcacgcctctggtca 521  Q
    |||||||||||||||||||||||||||||||| || || |||||||||||||| ||||||||||||||||||||||||||||||||||  ||||| | |     
T  33698933 ggaactaaatgccattttccttcaccatacttgtggatgcaagccttgagtagattatcttcctcatatgtccatgcaccttttctcaaacctctagcct 33699032  T
Q  522 tctccatat 530  Q
    |||||||||    
T  33699033 tctccatat 33699041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 151 - 295
Target Start/End: Original strand, 33749004 - 33749148
Alignment:
Q  151 ttggaagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataat 250  Q
    ||||||| |||||||||||| |  || ||||||||||| || ||||||||| |||||||||||| |||| |||| || |||||| | ||| |||||||||    
T  33749004 ttggaagcttacctattccccaagaggttgtgtaacctaaggatcatatcagcttcatcctcagaaaagatttctctgttgatggttgggtttaaataat 33749103  T
Q  251 ttaaccacctcaatctacagctttttcggcacctattcaatcctg 295  Q
    ||||||| ||||||||||| ||||||| ||||||||||| |||||    
T  33749104 ttaaccatctcaatctacaactttttctgcacctattcagtcctg 33749148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 407 - 502
Target Start/End: Original strand, 33763706 - 33763801
Alignment:
Q  407 atacctgctctttgtggaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttatcttcctcatatgtccatgcacct 502  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||| |  || ||||||||||||||||||||||||||||||||||| ||||||    
T  33763706 atacctgctctctgtggaacaaaatgccattttccttcaccatacttgttaatgcaagccttgagtagcttatcttcctcatatgtccaggcacct 33763801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 166 - 296
Target Start/End: Original strand, 33698707 - 33698837
Alignment:
Q  166 ttccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatttaaccacctcaatc 265  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||| || || ||||| || |||||   |||| |||||||||| |||||||||||||    
T  33698707 ttccctagaagtttgtgtaaccttagaatcatatcaatttcatcctcggcgaaactttctctgttgattgcggggtttaaataattcaaccacctcaatc 33698806  T
Q  266 tacagctttttcggcacctattcaatcctgt 296  Q
    |||| ||||| || ||||||||||| |||||    
T  33698807 tacaacttttccgacacctattcaaacctgt 33698837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 400 - 509
Target Start/End: Original strand, 33823135 - 33823244
Alignment:
Q  400 attcattatacctgctctttgtggaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttatcttcctcatatgtccatgca 499  Q
    |||||||||||||| |||||  |||| ||||||||||||||||||||||||||| || ||  ||||||||||||  || |||||||||||||||||||||    
T  33823135 attcattatacctgttcttttgggaattaaatgccattttccttcaccatacttgtgaatgtaagccttgagtaagttgtcttcctcatatgtccatgca 33823234  T
Q  500 ccttttctca 509  Q
    ||||||||||    
T  33823235 ccttttctca 33823244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 408 - 530
Target Start/End: Original strand, 33680385 - 33680507
Alignment:
Q  408 tacctgctctttgtggaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttatcttcctcatatgtccatgcaccttttct 507  Q
    ||||||||||||  ||||||||||||||||| ||||||||||| || || |||||  |||||||||| || || ||||||||||||||||||||||||||    
T  33680385 tacctgctcttttaggaactaaatgccatttcccttcaccatatttttgaatacagtccttgagtagattgtcctcctcatatgtccatgcaccttttct 33680484  T
Q  508 cacgcctctggtcatctccatat 530  Q
    ||  ||||||||| | |||||||    
T  33680485 caaacctctggtcttttccatat 33680507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 151 - 295
Target Start/End: Original strand, 33821799 - 33821943
Alignment:
Q  151 ttggaagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataat 250  Q
    ||||||| |||||||||||| || || |||||||||||||  ||||||||| ||||||| || | || |||||| || || || || ||| |||||||||    
T  33821799 ttggaagcttacctattccccaggagattgtgtaaccttatgatcatatcagcttcatcttcggtaatgctttctctgttaatattagggtttaaataat 33821898  T
Q  251 ttaaccacctcaatctacagctttttcggcacctattcaatcctg 295  Q
    ||| ||||||||||||||| |||||||| || |||||||||||||    
T  33821899 ttacccacctcaatctacaactttttcgacatctattcaatcctg 33821943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 33904423 - 33904475
Alignment:
Q  16 cacatcattagctgttctacccggaagccttgcagcaatcaatgaccatctaa 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33904423 cacatcattagctgttctacccggaagccttgcagcaatcaatgaccatctaa 33904475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 399 - 508
Target Start/End: Original strand, 33750168 - 33750277
Alignment:
Q  399 cattcattatacctgctctttgtggaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttatcttcctcatatgtccatgc 498  Q
    |||||| ||||||||||||||  |||| ||||||||||||||||||||||||||| |  ||| |||| ||||||| ||| ||||||||| ||||||| |     
T  33750168 cattcactatacctgctcttttaggaattaaatgccattttccttcaccatacttgttaatataagctttgagtaacttgtcttcctcagatgtccacgt 33750267  T
Q  499 accttttctc 508  Q
    || |||||||    
T  33750268 acgttttctc 33750277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 33679843 - 33679894
Alignment:
Q  16 cacatcattagctgttctacccggaagccttgcagcaatcaatgaccatcta 67  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33679843 cacatcattagctgttctacccggaagcctcgcagcaatcaatgaccatcta 33679894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 33698560 - 33698611
Alignment:
Q  16 cacatcattagctgttctacccggaagccttgcagcaatcaatgaccatcta 67  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  33698560 cacatcattagctgtcctacccggaagccttgcagcaatcaaagaccatcta 33698611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 33734331 - 33734382
Alignment:
Q  16 cacatcattagctgttctacccggaagccttgcagcaatcaatgaccatcta 67  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  33734331 cacatcattagcagttctaccaggaagccttgcagcaatcaatgaccatcta 33734382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 33865914 - 33865965
Alignment:
Q  16 cacatcattagctgttctacccggaagccttgcagcaatcaatgaccatcta 67  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  33865914 cacatcattagctgttctacccgggagtcttgcagcaatcaatgaccatcta 33865965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 33762793 - 33762843
Alignment:
Q  16 cacatcattagctgttctacccggaagccttgcagcaatcaatgaccatct 66  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  33762793 cacatcattcgctgttctaccgggaagccttgcagcaatcaatgaccatct 33762843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 33821661 - 33821712
Alignment:
Q  16 cacatcattagctgttctacccggaagccttgcagcaatcaatgaccatcta 67  Q
    |||||||||||| |||||||  ||||||||||||||||||||||||||||||    
T  33821661 cacatcattagccgttctactaggaagccttgcagcaatcaatgaccatcta 33821712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 175 - 295
Target Start/End: Original strand, 33680120 - 33680240
Alignment:
Q  175 agtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatttaaccacctcaatctacagcttt 274  Q
    |||||||||| |||||| |||||||||| |||||| |  |  || ||||| || |||||    ||| |||||||||| | ||||||||||||||| ||||    
T  33680120 agtttgtgtagccttagaatcatatcaatttcatcatgggagaaactttctctattgattgcagggtttaaataattcacccacctcaatctacaacttt 33680219  T
Q  275 ttcggcacctattcaatcctg 295  Q
    | ||||| |||||||| ||||    
T  33680220 tccggcatctattcaaacctg 33680240  T

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Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 33748803 - 33748854
Alignment:
Q  16 cacatcattagctgttctacccggaagccttgcagcaatcaatgaccatcta 67  Q
    |||||||||||||||||||||  |||| |||||||||||||| | |||||||    
T  33748803 cacatcattagctgttctaccttgaagtcttgcagcaatcaacgtccatcta 33748854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 33834923 - 33834974
Alignment:
Q  16 cacatcattagctgttctacccggaagccttgcagcaatcaatgaccatcta 67  Q
    |||||||||||||||||||||  |||| |||||||||||||| | |||||||    
T  33834923 cacatcattagctgttctaccttgaagtcttgcagcaatcaacgtccatcta 33834974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 159 - 541
Target Start/End: Original strand, 149000 - 149384
Alignment:
Q  159 ttacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatttaaccac 258  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  149000 ttacctattccctagaagtttgtgtaaccttaggatcatatcgacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatttaaccac 149099  T
Q  259 ctcaatctacagctttttcggcacctattcaatcctgtcatgtgtaacatataatttaagtagttatgcatggtannnnnnngcatttgctttg--atat 356  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||        |||||||||| |  ||||    
T  149100 ctcaatctacagcttttgcggcacctattcaattctgtcatgtgtaacatataatttaagtaattatgcatggttattttttgcatttgcttcgatatat 149199  T
Q  357 atagttgttcaatttaactaattgtaagcctaaaataaacggcattcattatacctgctctttgtggaactaaatgccattttccttcaccatacttctg 456  Q
    ||||||||| | |||||||||||||| ||||| ||||||   |||||||| ||||||||||||| ||||||||||||||||||||||| |||||||| |     
T  149200 atagttgttaagtttaactaattgtatgcctagaataaataacattcattttacctgctctttgaggaactaaatgccattttccttccccatacttgtc 149299  T
Q  457 tatacaagccttgagtagcttatcttcctcatatgtccatgcaccttttctcacgcctctggtcatctccatatttaaatttcct 541  Q
     || |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||| ||||||||||| ||||||    
T  149300 aatgcaagccttgagtagcttatcttcctcgtatgtccaggcaccttttctcacgcctctgggcatatccatatttaagtttcct 149384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 148809 - 148860
Alignment:
Q  17 acatcattagctgttctacccggaagccttgcagcaatcaatgaccatctaa 68  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  148809 acatcattagctgttcttcccggaagccttccagcaatcaatgaccatctaa 148860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 568 - 614
Target Start/End: Original strand, 149439 - 149485
Alignment:
Q  568 tatatatttatgcatacatgtgttaatgttgcgtaaaaagacaaagg 614  Q
    ||||||||||| |||||||||||||| |||||||||||||| |||||    
T  149439 tatatatttatacatacatgtgttaaggttgcgtaaaaagagaaagg 149485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 3e-41; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 134 - 296
Target Start/End: Complemental strand, 5470290 - 5470128
Alignment:
Q  134 tgaatattaacttgtccttggaagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgat 233  Q
    ||||| |||| ||| ||| ||||| ||||||||| ||||  ||||||||||||||||| |||||||||||||||||||||| ||||||||  || |||||    
T  5470290 tgaattttaatttggcctcggaagcttacctatttcctaagagtttgtgtaaccttaggatcatatcaacttcatcctcagaaaagctttttctattgat 5470191  T
Q  234 gttggggcttaaataatttaaccacctcaatctacagctttttcggcacctattcaatcctgt 296  Q
    ||||||  |||||||||||| ||||||||||||||| |||||||| || ||||||||||||||    
T  5470190 gttgggctttaaataatttatccacctcaatctacaactttttcgacatctattcaatcctgt 5470128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 409 - 519
Target Start/End: Complemental strand, 5468629 - 5468519
Alignment:
Q  409 acctgctctttgtggaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttatcttcctcatatgtccatgcaccttttctc 508  Q
    |||||||||||| |||| ||||||||||||||||||||||||||| |  ||  ||||||||||||  || |||||||| |||||||||||||||||| ||    
T  5468629 acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagttgtcttcctcgtatgtccatgcaccttttttc 5468530  T
Q  509 acgcctctggt 519  Q
    |||||| ||||    
T  5468529 acgcctatggt 5468519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 5471239 - 5471193
Alignment:
Q  22 attagctgttctacccggaagccttgcagcaatcaatgaccatctaa 68  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||    
T  5471239 attagctgttctacccggaagccttccagcaatcaatgaccatctaa 5471193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 3e-38; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 155 - 296
Target Start/End: Original strand, 21306037 - 21306178
Alignment:
Q  155 aagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatttaa 254  Q
    ||||||||||||| ||||| ||||||||||||||||| |||| |||  |||||||||||| ||| ||| | || ||||||||||||||||| ||||||||    
T  21306037 aagattacctatttcctagtagtttgtgtaaccttaggatcaaatcttcttcatcctcagaaaatcttcctctgttgatgttggggcttaagtaatttaa 21306136  T
Q  255 ccacctcaatctacagctttttcggcacctattcaatcctgt 296  Q
    ||||||||||||||| ||||||| ||| ||||||||||||||    
T  21306137 ccacctcaatctacaactttttctgcatctattcaatcctgt 21306178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 21305899 - 21305950
Alignment:
Q  16 cacatcattagctgttctacccggaagccttgcagcaatcaatgaccatcta 67  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  21305899 cacatcattagctgttctacccggaagccttccagcaatcaatgaccatcta 21305950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 422 - 530
Target Start/End: Original strand, 21306329 - 21306437
Alignment:
Q  422 ggaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttatcttcctcatatgtccatgcaccttttctcacgcctctggtca 521  Q
    |||||||||| ||||||||||||||| ||| | |  || |||||||||||||||| ||||||||  || |||||||| ||||||||||| |||| |||      
T  21306329 ggaactaaattccattttccttcaccgtacgtgttaatgcaagccttgagtagctcatcttccttgtaagtccatgcgccttttctcacacctccggtat 21306428  T
Q  522 tctccatat 530  Q
    |||||||||    
T  21306429 tctccatat 21306437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 74; Significance: 2e-33; HSPs: 3)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 149 - 298
Target Start/End: Complemental strand, 22020 - 21871
Alignment:
Q  149 ccttggaagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaata 248  Q
    |||| |||| ||||||||| |||||||| |||||||||||||| |||| |||||||||||||| || |||  | ||||| ||||||| |||  |||||||    
T  22020 cctttgaagcttacctattgcctagaaggttgtgtaaccttagaatcaaatcaacttcatccttagaaaaattctccctgttgatgtagggatttaaata 21921  T
Q  249 atttaaccacctcaatctacagctttttcggcacctattcaatcctgtca 298  Q
    ||||| ||||||||||||||| |||||||| || ||||||||||||||||    
T  21920 atttacccacctcaatctacaactttttcgacatctattcaatcctgtca 21871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 22205 - 22155
Alignment:
Q  16 cacatcattagctgttctacccggaagccttgcagcaatcaatgaccatct 66  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  22205 cacatcattagctgttctacctggaagccttccagcaatcaatgaccatct 22155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 399 - 513
Target Start/End: Complemental strand, 19960 - 19846
Alignment:
Q  399 cattcattatacctgctctttgtggaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttatcttcctcatatgtccatgc 498  Q
    ||||| ||||||||| |||||  |||| |||||||||||||||| |||||| |||  | ||  ||||||||||    || ||||| ||||||||||||||    
T  19960 cattctttatacctgttctttcaggaattaaatgccattttcctacaccatgcttgagaatgtaagccttgagacagttgtcttcttcatatgtccatgc 19861  T
Q  499 accttttctcacgcc 513  Q
    ||||||||| |||||    
T  19860 accttttctaacgcc 19846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 60; Significance: 3e-25; HSPs: 3)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 175 - 298
Target Start/End: Complemental strand, 90191 - 90068
Alignment:
Q  175 agtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatttaaccacctcaatctacagcttt 274  Q
    ||||| ||||||||||| |||||||||||||||||||||| ||| |||||  | |||||| | ||| ||||||| || |||||||| |||||||| ||||    
T  90191 agtttttgtaaccttaggatcatatcaacttcatcctcagaaaatctttctttgttgatggttgggtttaaatagttaaaccaccttaatctacaacttt 90092  T
Q  275 ttcggcacctattcaatcctgtca 298  Q
    |||| |||||||| ||||||||||    
T  90091 ttcgacacctatttaatcctgtca 90068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 406 - 519
Target Start/End: Complemental strand, 88992 - 88879
Alignment:
Q  406 tatacctgctctttgtggaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttatcttcctcatatgtccatgcacctttt 505  Q
    ||||||||||||| | ||||||| |||||||||||||| ||||||||| |  || || ||||||||||  |||||||| ||||  ||||| | |||||||    
T  88992 tatacctgctcttcgaggaactagatgccattttccttgaccatacttgttaatgcatgccttgagtaagttatcttcttcattcgtccaggtacctttt 88893  T
Q  506 ctcacgcctctggt 519  Q
     ||||||| |||||    
T  88892 ttcacgccactggt 88879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 114257 - 114207
Alignment:
Q  17 acatcattagctgttctacccggaagccttgcagcaatcaatgaccatcta 67  Q
    |||||||||||||||||| ||||||||||| | ||||||||||||||||||    
T  114257 acatcattagctgttctagccggaagccttcccgcaatcaatgaccatcta 114207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 58; Significance: 5e-24; HSPs: 3)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 149 - 298
Target Start/End: Complemental strand, 24435 - 24286
Alignment:
Q  149 ccttggaagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaata 248  Q
    ||||||| | ||||||||||||||| || |||||||||||||  || | |||| ||||||||| || ||||   ||||| |||||||  ||| |||||||    
T  24435 ccttggacgcttacctattccctaggaggttgtgtaaccttaaaattaaatcagcttcatccttagaaaagtcctccctgttgatgtaagggtttaaata 24336  T
Q  249 atttaaccacctcaatctacagctttttcggcacctattcaatcctgtca 298  Q
    ||||| ||| || |||||||| |||||||| |||||||||||||||||||    
T  24335 atttacccatcttaatctacaactttttcgacacctattcaatcctgtca 24286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 399 - 513
Target Start/End: Complemental strand, 23408 - 23294
Alignment:
Q  399 cattcattatacctgctctttgtggaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttatcttcctcatatgtccatgc 498  Q
    ||||| ||||||||| |||||  |||| |||||||||||||||| |||||| |||  | ||  ||||||||||    || ||||| ||||||||||||||    
T  23408 cattcgttatacctgttctttcaggaattaaatgccattttcctacaccatgcttgagaatgtaagccttgagacagttgtcttcttcatatgtccatgc 23309  T
Q  499 accttttctcacgcc 513  Q
    ||||||||| |||||    
T  23308 accttttctaacgcc 23294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 25269 - 25218
Alignment:
Q  16 cacatcattagctgttctacccggaagccttgcagcaatcaatgaccatcta 67  Q
    |||||||||||||| ||||||| |||| |||||||||||||||| |||||||    
T  25269 cacatcattagctgatctaccctgaagtcttgcagcaatcaatgtccatcta 25218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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