View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7785_low_21 (Length: 226)
Name: NF7785_low_21
Description: NF7785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7785_low_21 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 226
Target Start/End: Complemental strand, 7279113 - 7278898
Alignment:
| Q |
11 |
agaacctgtgaagatgatgaaaaatgagcaaaaagagaggataaggatcgctgaaacaatcatgaatttgcttcttaggttggattctgttagagtcttc |
110 |
Q |
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| T |
7279113 |
agaaactgtgaagatgatgaaaaaggagcaaaaagagaggataaggatcgctgaaacaattatgaatttgcttcttaggttggattctgttagagtattt |
7279014 |
T |
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| Q |
111 |
cattgttctgctcttagggacttgagaaagtcgattatcaaaagggctatagttctgcaagaatttgttgatcaaattcaaatggtgggtcccacagagg |
210 |
Q |
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| T |
7279013 |
cattgttctgctcttagggacttgagaaagtcgattatcaaaagggctattgttcttcaagaatttgttgatcaaattcaaatggtgggtcccacagagg |
7278914 |
T |
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| Q |
211 |
aagttgaaggcggtga |
226 |
Q |
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| T |
7278913 |
aagttgaaggcggtga |
7278898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 226
Target Start/End: Original strand, 7374726 - 7374941
Alignment:
| Q |
11 |
agaacctgtgaagatgatgaaaaatgagcaaaaagagaggataaggatcgctgaaacaatcatgaatttgcttcttaggttggattctgttagagtcttc |
110 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
7374726 |
agaaactgtgaagatgatgaaaaaggagcaaaaagagaggataaggatcgctgaaacaattatgaatttgcttcttaggttggattctgttagagtattt |
7374825 |
T |
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| Q |
111 |
cattgttctgctcttagggacttgagaaagtcgattatcaaaagggctatagttctgcaagaatttgttgatcaaattcaaatggtgggtcccacagagg |
210 |
Q |
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| T |
7374826 |
cattgttctgctcttagggacttgagaaagtcgattatcaaaagggctattgttcttcaagaatttgttgatcaaattcaaatggtgggtcccacagagg |
7374925 |
T |
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| Q |
211 |
aagttgaaggcggtga |
226 |
Q |
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| T |
7374926 |
aagttgaaggcggtga |
7374941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 5848125 - 5848215
Alignment:
| Q |
11 |
agaacctgtgaagatgatgaaaaatgagcaaaaagagaggataaggatcgctgaaacaatcatgaatttgcttcttaggttggattctgtta |
102 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||| |
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| T |
5848125 |
agaaactgtgaagatgatgaaaag-gagcaaaaagagaggataaggatcactaaaaccatcatgaatttgcttcttaggttggattctgtta |
5848215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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