View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7785_low_5 (Length: 516)
Name: NF7785_low_5
Description: NF7785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7785_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 470; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Original strand, 48964192 - 48964689
Alignment:
| Q |
1 |
caaaaagatatactcgttattaccatcacacaattgagcaaatagcaaattgaagatattttgtacatctcataaatcaaactttctaaatggctgcaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48964192 |
caaaaagatatactcgttattaccatcacacaattgagcaaatagcaaattgaagatattttgtacatctcataaatcaaactttctaaatggctgcaat |
48964291 |
T |
|
| Q |
101 |
tgccttcaatattttcccttcaatttcaaaacactgaataaataattcaaagctttgtgttgtatatatatgatccccaaatggatgaatgattttgttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48964292 |
tgccttcaatattttcccttcaatttcaaaacactgaataaataattcaaagctttgtgttgtatatatatgatccccaaatggatgaatgattttgttt |
48964391 |
T |
|
| Q |
201 |
taccttagatatatgagttagattccctttcttatagaatggaataattctatcatgtcattctaactcactgctgaacttttctcttaggactcacaaa |
300 |
Q |
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| T |
48964392 |
taccttagatatatgagttagattccctttcttatagaatggaataattctatcatgtcattctaattcactgctgaacttttctgttaggattcacaaa |
48964491 |
T |
|
| Q |
301 |
ctttttaggaatagttttatctgttaattattttgaaatgatatatgtatctcaaggaagaaaaaataaagacaagaaagatactccacttatggaacat |
400 |
Q |
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| T |
48964492 |
ctttttaggaatagtaatatctgtcaattattttgaaatgctatatgtatctcaaggaagaaaaaataaagacaagaaagatactccacttatggaacat |
48964591 |
T |
|
| Q |
401 |
actactttcccttcttagtattctctttcagtaacatgttcaccattctttgcatacaatatatagatgtgttttaccaataactaagaccaagatag |
498 |
Q |
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| T |
48964592 |
actactttcccttcttagtattctctttcagtaacatgttcaccattctttgcatacaatatatagatgtgttttaccaataactaagaccaagatag |
48964689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 39 - 150
Target Start/End: Original strand, 48959850 - 48959961
Alignment:
| Q |
39 |
caaatagcaaattgaagatattttgtacatctcataaatcaaactttctaaatggctgcaattgccttcaatattttcccttcaatttcaaaacactgaa |
138 |
Q |
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|||||||||||||||||| || |||||||||| | ||||||||||||| | | || ||||||||||| | ||| | ||||||||||||||||||||| |
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| T |
48959850 |
caaatagcaaattgaagacatattgtacatcttaaaaatcaaactttcctgctagttgtaattgccttcattttttcctcttcaatttcaaaacactgaa |
48959949 |
T |
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| Q |
139 |
taaataattcaa |
150 |
Q |
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||| ||||||| |
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| T |
48959950 |
aaaaaaattcaa |
48959961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 360
Target Start/End: Original strand, 48960039 - 48960148
Alignment:
| Q |
255 |
atgtcattctaactcactgctgaacttttctcttaggactcacaaactttttaggaatagttttatctgttaattattttgaaatg----atatatgtat |
350 |
Q |
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||||||||||||||||| |||| |||||||| || ||||||| || || |||||| |||| |||| ||||||||||||||||| |||||||||| |
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| T |
48960039 |
atgtcattctaactcacagctgtacttttctgtttggactcataagtttgttaggattagtaagatctcttaattattttgaaatgctgtatatatgtat |
48960138 |
T |
|
| Q |
351 |
ctcaaggaag |
360 |
Q |
| |
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|||| ||||| |
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| T |
48960139 |
ctcatggaag |
48960148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 48959982 - 48960014
Alignment:
| Q |
179 |
aaatggatgaatgattttgttttaccttagata |
211 |
Q |
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|||||||||||| |||||||||||||||||||| |
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| T |
48959982 |
aaatggatgaataattttgttttaccttagata |
48960014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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