View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7785_low_6 (Length: 393)
Name: NF7785_low_6
Description: NF7785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7785_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 55 - 381
Target Start/End: Complemental strand, 39839644 - 39839318
Alignment:
| Q |
55 |
cacaaaagttaaaaaagaattactatgaagcactgacacagataccagacacataaaaggaacctaccgagctacgaacaaccatggaaggtaaagcatg |
154 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39839644 |
cacaaaagttaaaaaagaattactatgaagcactgacacagataccagacacataaaaggaacttaccgagctacgaacaaccatggaaggtaaagcatg |
39839545 |
T |
|
| Q |
155 |
atgattgctaagatcaagtgagagttccattccagaatttccacatccaacaacaagaactttctttccttcaaaatttttccctgacttgtaatcacaa |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39839544 |
atgattgctaagatcaagtgagagttccattccagaatttccacatccaacaacaagaactttctttccttcaaaatttttccctgacttgtaatcacaa |
39839445 |
T |
|
| Q |
255 |
gcataaacaacttcacctttgaattcagaaagtccttcaatttcaggagtaacacactcagcattttcgccggtagcaacaacaagccccctacaaatat |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39839444 |
gcataaacaacttcacctttgaattcagaaagtccttcaatttcaggagtaacacactcagcattttcgccggtagcaacaacaagccacctacaaatat |
39839345 |
T |
|
| Q |
355 |
actcaacttcatttgtcttgaccctcc |
381 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
39839344 |
actcaacttcatttgtcttgaccctcc |
39839318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 55 - 381
Target Start/End: Original strand, 39733314 - 39733640
Alignment:
| Q |
55 |
cacaaaagttaaaaaagaattactatgaagcactgacacagataccagacacataaaaggaacctaccgagctacgaacaaccatggaaggtaaagcatg |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39733314 |
cacaaaagttaaaaaagaattactatgaagcactgacacatataccagacacataaaaggaacttaccgagctacgaacaaccatggaaggtaaagcatg |
39733413 |
T |
|
| Q |
155 |
atgattgctaagatcaagtgagagttccattccagaatttccacatccaacaacaagaactttctttccttcaaaatttttccctgacttgtaatcacaa |
254 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39733414 |
atgattgctaagatcaagtgagagttccattccagaatttccacatccaacaacaagaactttctttccttcaaaatttttccctgacttgtaatcacaa |
39733513 |
T |
|
| Q |
255 |
gcataaacaacttcacctttgaattcagaaagtccttcaatttcaggagtaacacactcagcattttcgccggtagcaacaacaagccccctacaaatat |
354 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39733514 |
gcataaacaacttcacctttgaattcagaaagtccttcaatttcaggagtaacacactcagcattttcgccggtagcaacaacaagccacctacaaatat |
39733613 |
T |
|
| Q |
355 |
actcaacttcatttgtcttgaccctcc |
381 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
39733614 |
actcaacttcatttgtcttgaccctcc |
39733640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 119 - 368
Target Start/End: Original strand, 29857435 - 29857687
Alignment:
| Q |
119 |
taccgagctacgaacaaccatggaaggtaaagcatgatgattgctaagatcaagtgagagttccattccagaatttccacatccaacaacaagaactttc |
218 |
Q |
| |
|
|||||||||||||| ||| || |||||| | |||| |||||||| ||||||||| || ||||||||||||||||| ||||| |||||||| | ||||||| |
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|
| T |
29857435 |
taccgagctacgaagaacaatagaaggtgatgcattatgattgcaaagatcaagagaaagttccattccagaattaccacaaccaacaaccaaaactttc |
29857534 |
T |
|
| Q |
219 |
tttccttcaaaatttttccctgacttgtaatcacaagcataaacaacttcacctttgaattcagaa---agtccttcaatttcaggagtaacacactcag |
315 |
Q |
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|| ||| |||| ||| ||||| || ||||||||||||| || || |||||| ||||||||| | | |||||||| | ||| ||||||||| | |
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| T |
29857535 |
ttccctctaaaactttcacctgatttataatcacaagcatgaataatttcacccttgaattcaccacctaacccttcaatataaggcacaacacactctg |
29857634 |
T |
|
| Q |
316 |
cattttcgccggtagcaacaacaagccccctacaaatatactcaacttcattt |
368 |
Q |
| |
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|||| || || |||||||| |||||| ||||||||||||||||||||||||| |
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|
| T |
29857635 |
cattctcaccagtagcaaccacaagcgacctacaaatatactcaacttcattt |
29857687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 365
Target Start/End: Complemental strand, 17408021 - 17407974
Alignment:
| Q |
318 |
ttttcgccggtagcaacaacaagccccctacaaatatactcaacttca |
365 |
Q |
| |
|
||||| ||||||||||| ||||||| |||||||||||||||||||||| |
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|
| T |
17408021 |
ttttcaccggtagcaaccacaagccacctacaaatatactcaacttca |
17407974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 223
Target Start/End: Complemental strand, 17408175 - 17408116
Alignment:
| Q |
164 |
aagatcaagtgagagttccattccagaatttccacatccaacaacaagaactttctttcc |
223 |
Q |
| |
|
||||||||| || | |||||| ||||||||||||||||||||||||||||| || ||||| |
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| T |
17408175 |
aagatcaagagaaacttccatgccagaatttccacatccaacaacaagaacattttttcc |
17408116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 103
Target Start/End: Original strand, 19040190 - 19040219
Alignment:
| Q |
74 |
ttactatgaagcactgacacagataccaga |
103 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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|
| T |
19040190 |
ttactatgaagcactgacacagataccaga |
19040219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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