View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7785_low_9 (Length: 319)
Name: NF7785_low_9
Description: NF7785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7785_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 21 - 300
Target Start/End: Original strand, 27692971 - 27693244
Alignment:
| Q |
21 |
agtaaaactaatattctgattactctgacaccatcaaaggaaatctacgtagcttgttggagagccctgatgaggaggtgtggtctaaacagtgtctgaa |
120 |
Q |
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| T |
27692971 |
agtaaaactaatattctgattactctgacaccatcaaaggaaatcttcgtagcttgttggagagccctgatgaggaggtgtggtctaaacagtgtctgaa |
27693070 |
T |
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| Q |
121 |
ggatcaacctcagccatatttgctggtcatggaggcctatcatacaacttccaacgtcgatcaatagtgtctgagtccattacaatgttcacatttgaga |
220 |
Q |
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| T |
27693071 |
ggatcaaccttagccatatttgctggtcatggaggcctatcatacaacttccaacgtcgatcaatagtgtccgagtccattacaatgttcacatttgaga |
27693170 |
T |
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| Q |
221 |
caaggcttagaggtgaatgcccctcatagatagcaattctaattatttccaagaagtgtaaggacaactatatcacatgt |
300 |
Q |
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| T |
27693171 |
caaggcttagaggtgaa------tcatagatagcaattctaattatttccaagaagtgtaaggacaacaatatcacatgt |
27693244 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 122
Target Start/End: Complemental strand, 51287233 - 51287148
Alignment:
| Q |
34 |
ttctgattactctgacaccatcaaaggaaatctacgtagcttgttggagagccctgatgaggaggtgtggtctaaacagtgtctgaagg |
122 |
Q |
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||||||||||||||||| || | ||||||||| ||||||||||||||| || |||||||||||||||| |||| |||| ||||| |
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| T |
51287233 |
ttctgattactctgacaacaccgaaggaaatcactgtagcttgttggagaacc---ttgaggaggtgtggtctgaacaatgtcagaagg |
51287148 |
T |
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