View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7786_high_1 (Length: 839)
Name: NF7786_high_1
Description: NF7786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7786_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 518; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 42 - 825
Target Start/End: Complemental strand, 7821475 - 7820665
Alignment:
| Q |
42 |
ttatatttataacttagtagtatggnnnnnnnagagcatgtttgatggacaaaataagagagatagacacatgtagattagtaattaagtggatcccaca |
141 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7821475 |
ttatatttataacttagtagtatggtctttttagagcatctttgatggacaaaataagagagatagacacatgtagattagtaattaagtggatctcaca |
7821376 |
T |
|
| Q |
142 |
aagctatcatatgtgtctatctctctcataaatgaacactaaatgaagaaagtgaatggaggaaagtaagagagtgttcatagcattgtcaaacaaatta |
241 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7821375 |
aagttatcatatgtgtctatctctctcataaatgaacactaaatgaagaaagtgaatgaacgaaagtaagagagtgttcatggcattgtcaaacaaatta |
7821276 |
T |
|
| Q |
242 |
caaacatgaaatgcacaggggcataagtacgaaagaaaactcgagtcttgctaggatttatcatatcttgtatccaattcaatgttgtgtcaatagatct |
341 |
Q |
| |
|
||||| ||||||||| ||||| |||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||| || |
|
|
| T |
7821275 |
caaacctgaaatgcatagggg-ataagtacaaaagaaaacttgagtcttgctaggatttatcgtatcttgtatccaattcaatgttgtgtgaatagacct |
7821177 |
T |
|
| Q |
342 |
cttatatgcatcttctaccttcatttccaacttaacttccttacctt----------------cctagacaatcatgaaaaatttctgtctattttacat |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||| |
|
|
| T |
7821176 |
cttatatgcatcttctaccttcatttccaacttaacttccttaccttcttggaaataacaacccccggacaatcatgaaaaatttctgtcaattttacat |
7821077 |
T |
|
| Q |
426 |
atnnnnnnnnnggataaatgttatataggtcgcttattataaattagagtaataaaaataaggcttcattattcatttaatccttctaaatatagcaaac |
525 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||| |
|
|
| T |
7821076 |
aaaaaaaaaaaggataaatgttatataggtcgcttattataaattagagtaataaaaataaggcttgattattcattcagtccttctaaatatagcaaac |
7820977 |
T |
|
| Q |
526 |
tttggttttaatcaggataattttttattttatacttcatcaacataaatcgatctttgttgatttttgacaaactaatgtggcgaacacaaagccaaat |
625 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7820976 |
tttgattttaatcaggataattttttattttatacttcatcaacataaatcgatctttgttgatttttgacaaactgatgtggcgaacacaaagccaaat |
7820877 |
T |
|
| Q |
626 |
---------acctagtattccaatgagtgcat-----ccattattgtttttctaatagtaataactcatagatgtgtgtcatccattagattgttcttca |
711 |
Q |
| |
|
|||||| |||||||||| ||||| | || ||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||| |
|
|
| T |
7820876 |
gacaacacgacctagcattccaatgaatgcattctgcacgtttttgtttttctaatagtaataactcaaaga--tgtgtcatccattagatggttcttca |
7820779 |
T |
|
| Q |
712 |
ttagccacatgataaaaaagttaagagtaactaaaaccaaagttgattatatttacaagaatcaaatgcaaaaacaaacctaaaaataaagacggattga |
811 |
Q |
| |
|
||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7820778 |
ttaaccacatgataaaaaagtttagagtaactaaaaccaaagttgattatatttacaagaatcaaatgcaaaaacaaacctaaaaataaagacggattga |
7820679 |
T |
|
| Q |
812 |
attaccctttgatg |
825 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
7820678 |
attaccctttgatg |
7820665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 203 - 389
Target Start/End: Complemental strand, 7811346 - 7811161
Alignment:
| Q |
203 |
gaaagtaagagagtgttcatagcattgtcaaacaaattacaaacatgaaatgcacaggggcataagtacgaaagaaaactcgagtcttgctaggatttat |
302 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||| |||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
7811346 |
gaaagtaagagagtgttcatggcattgtcaaacaaattacaaacctgaaatgcatagggg-ataagtacaaaagaaaacttgagtcttgctaggatttat |
7811248 |
T |
|
| Q |
303 |
catatcttgtatccaattcaatgttgtgtcaatagatctcttatatgcatcttctaccttcatttccaacttaacttccttaccttc |
389 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7811247 |
cgtatcttgtatccaattcaatgttgtgtgaatagacctcttatatgcatcttctaccttcatttccaacttaacttccttaccttc |
7811161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 229 - 389
Target Start/End: Complemental strand, 7811517 - 7811357
Alignment:
| Q |
229 |
gtcaaacaaattacaaacatgaaatgcacaggggcataagtacgaaagaaaactcgagtcttgctaggatttatcatatcttgtatccaattcaatgttg |
328 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
7811517 |
gtcaaacaaattacaaacctgaaatgcacaggagcataagtacgaaagaaaacttgagtcttgttaggatttattgtatcttgtatccaattcaatgttg |
7811418 |
T |
|
| Q |
329 |
tgtcaatagatctcttatatgcatcttctaccttcatttccaacttaacttccttaccttc |
389 |
Q |
| |
|
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7811417 |
tgtgaatagacctcttatatgcatcttctaccttcatttccaacttaacttccttaccttc |
7811357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 437 - 576
Target Start/End: Complemental strand, 7811097 - 7810960
Alignment:
| Q |
437 |
ggataaatgttatataggtcgcttattataaattagagtaataaaaataaggcttcattattcatttaatccttctaaatatagcaaactttggttttaa |
536 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||||||||||||||| || |||||||||||| ||||| ||||| |||||||||| ||||| |
|
|
| T |
7811097 |
ggataaatgtcatataggtcgcatattataaattagagtaataaaaataaggtttgattattcatttagtccttgcaaata-agcaaactttaattttag |
7810999 |
T |
|
| Q |
537 |
tcaggataattttttattttatacttcatcaacataaatc |
576 |
Q |
| |
|
|| |||||||||||| | || |||||||||||||| |||| |
|
|
| T |
7810998 |
tcgggataattttttgtgtt-tacttcatcaacatgaatc |
7810960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 688 - 825
Target Start/End: Complemental strand, 7810828 - 7810689
Alignment:
| Q |
688 |
tgtcatccattagattgttcttcattagccacatgataaaaaa-gttaagagtaactaaaaccaaagttgattatatttacaagaatcaaatgcaaaaac |
786 |
Q |
| |
|
||||||||||||||| | ||||||| ||||||||||||||||| ||| ||| ||||||||| |||||| ||||||||| || |||||||||||| ||| |
|
|
| T |
7810828 |
tgtcatccattagatggatcttcatcagccacatgataaaaaaagttttgaggaactaaaactaaagttcattatatttgcaggaatcaaatgcatgaac |
7810729 |
T |
|
| Q |
787 |
aaacctaaaaa-taaagacggattgaattaccctttgatg |
825 |
Q |
| |
|
||||||||||| |||||| |||||| | |||| ||||||| |
|
|
| T |
7810728 |
aaacctaaaaattaaagaaggattggaataccatttgatg |
7810689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 4623592 - 4623542
Alignment:
| Q |
138 |
cacaaagctatcatatgtgtctatctctctcataaatgaacactaaatgaa |
188 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||| ||||||||||||| |
|
|
| T |
4623592 |
cacaaagctatcatatatgtatatctctctcataaataaacactaaatgaa |
4623542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 125 - 208
Target Start/End: Complemental strand, 2749688 - 2749604
Alignment:
| Q |
125 |
attaagtggatcccacaaagctatcatatgtgtctatctctctcataaatgaacactaaatgaa-gaaagtgaatggaggaaagt |
208 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||||| |||||| ||| ||||||| |||||| ||||||| ||||| |
|
|
| T |
2749688 |
attaagtagatcccacaaagctatcacatgtgtctatctctcttataaattgacaacaaatgaaggaaagtaaatggagcaaagt |
2749604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 16875078 - 16875136
Alignment:
| Q |
128 |
aagtggatcccacaaagctatcatatgtgtctatctctctcataaatgaacactaaatg |
186 |
Q |
| |
|
||||| ||| ||| ||||||||| ||||||||||||||||||||||| ||| |||||| |
|
|
| T |
16875078 |
aagtgaatctcactaagctatcacttgtgtctatctctctcataaatggacaataaatg |
16875136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 21253159 - 21253200
Alignment:
| Q |
125 |
attaagtggatcccacaaagctatcatatgtgtctatctctc |
166 |
Q |
| |
|
||||||||||||||||||| |||||| |||||| |||||||| |
|
|
| T |
21253159 |
attaagtggatcccacaaaactatcacatgtgtttatctctc |
21253200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University