View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7786_low_10 (Length: 307)

Name: NF7786_low_10
Description: NF7786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7786_low_10
NF7786_low_10
[»] chr3 (22 HSPs)
chr3 (13-153)||(39980535-39980675)
chr3 (13-120)||(39979286-39979393)
chr3 (13-78)||(31365396-31365461)
chr3 (246-291)||(39980398-39980443)
chr3 (13-69)||(29520602-29520658)
chr3 (28-78)||(2719350-2719400)
chr3 (20-78)||(28795963-28796021)
chr3 (23-73)||(46778361-46778411)
chr3 (13-78)||(1508705-1508770)
chr3 (13-65)||(4400940-4400992)
chr3 (13-69)||(5331184-5331240)
chr3 (20-78)||(30956757-30956815)
chr3 (20-78)||(30972569-30972627)
chr3 (20-78)||(35959587-35959645)
chr3 (24-75)||(35328288-35328338)
chr3 (20-79)||(52597579-52597637)
chr3 (18-72)||(29002959-29003013)
chr3 (28-78)||(47132258-47132308)
chr3 (18-47)||(23815975-23816004)
chr3 (26-78)||(34034052-34034104)
chr3 (20-48)||(37389122-37389150)
chr3 (35-75)||(47249604-47249644)
[»] chr8 (16 HSPs)
chr8 (13-78)||(14956419-14956484)
chr8 (20-78)||(41475181-41475239)
chr8 (246-291)||(42386313-42386358)
chr8 (20-78)||(1058205-1058263)
chr8 (15-79)||(41821439-41821501)
chr8 (19-71)||(900816-900868)
chr8 (22-78)||(28763254-28763310)
chr8 (18-73)||(41589579-41589633)
chr8 (20-62)||(8216787-8216829)
chr8 (20-78)||(34236053-34236111)
chr8 (32-78)||(40981011-40981057)
chr8 (22-64)||(41442558-41442600)
chr8 (13-78)||(15180422-15180487)
chr8 (13-62)||(35749688-35749737)
chr8 (13-78)||(38750239-38750304)
chr8 (13-77)||(15179034-15179098)
[»] chr5 (18 HSPs)
chr5 (21-78)||(19460508-19460565)
chr5 (22-78)||(32372505-32372561)
chr5 (20-78)||(7319142-7319200)
chr5 (34-78)||(24030547-24030591)
chr5 (20-78)||(34736647-34736705)
chr5 (25-78)||(32703574-32703627)
chr5 (36-76)||(39477844-39477884)
chr5 (20-78)||(7984869-7984927)
chr5 (20-78)||(28776866-28776924)
chr5 (32-70)||(40426651-40426689)
chr5 (13-46)||(16937991-16938024)
chr5 (13-78)||(26005362-26005427)
chr5 (21-70)||(30291160-30291209)
chr5 (13-78)||(32941352-32941416)
chr5 (20-73)||(39105360-39105413)
chr5 (255-291)||(1752292-1752328)
chr5 (20-78)||(6096437-6096492)
chr5 (26-78)||(35299618-35299670)
[»] chr6 (6 HSPs)
chr6 (13-75)||(6538401-6538463)
chr6 (13-72)||(18076083-18076142)
chr6 (20-75)||(19411614-19411669)
chr6 (20-78)||(847949-848007)
chr6 (20-78)||(34430597-34430655)
chr6 (18-54)||(10401137-10401173)
[»] chr2 (16 HSPs)
chr2 (20-78)||(41407182-41407240)
chr2 (13-78)||(32592468-32592533)
chr2 (16-78)||(39659635-39659697)
chr2 (20-77)||(19608746-19608803)
chr2 (20-73)||(42659282-42659335)
chr2 (33-78)||(43570307-43570352)
chr2 (20-71)||(1625799-1625850)
chr2 (32-78)||(27695730-27695776)
chr2 (15-78)||(31744247-31744308)
chr2 (20-75)||(9395024-9395079)
chr2 (20-78)||(11863812-11863870)
chr2 (28-82)||(41170415-41170469)
chr2 (33-78)||(15757810-15757855)
chr2 (21-78)||(26626767-26626824)
chr2 (20-48)||(32364845-32364873)
chr2 (20-76)||(44255442-44255498)
[»] chr7 (19 HSPs)
chr7 (13-78)||(9210509-9210574)
chr7 (13-79)||(23989608-23989674)
chr7 (20-78)||(33128638-33128696)
chr7 (13-78)||(21568752-21568817)
chr7 (21-78)||(47795848-47795905)
chr7 (22-78)||(38500051-38500107)
chr7 (13-69)||(45806601-45806657)
chr7 (20-75)||(20428351-20428406)
chr7 (27-70)||(21619306-21619349)
chr7 (20-78)||(33552942-33553000)
chr7 (20-78)||(46078028-46078086)
chr7 (17-78)||(18865178-18865239)
chr7 (41-78)||(48469931-48469968)
chr7 (23-78)||(20881760-20881815)
chr7 (30-77)||(46407425-46407472)
chr7 (20-78)||(3308383-3308441)
chr7 (20-70)||(7612358-7612408)
chr7 (20-72)||(33672975-33673027)
chr7 (34-78)||(46139833-46139877)
[»] chr1 (17 HSPs)
chr1 (20-71)||(38247341-38247392)
chr1 (20-78)||(14331670-14331728)
chr1 (21-75)||(45975584-45975638)
chr1 (20-78)||(5894284-5894342)
chr1 (20-78)||(9656537-9656595)
chr1 (20-78)||(14576784-14576842)
chr1 (14-78)||(1510434-1510498)
chr1 (17-73)||(5741548-5741604)
chr1 (17-73)||(41195322-41195378)
chr1 (34-78)||(41505568-41505612)
chr1 (19-78)||(1829074-1829133)
chr1 (20-78)||(37473280-37473338)
chr1 (20-70)||(38116306-38116356)
chr1 (13-51)||(44932056-44932094)
chr1 (20-78)||(47498964-47499022)
chr1 (13-78)||(1509633-1509698)
chr1 (17-73)||(5720867-5720923)
[»] scaffold0018 (1 HSPs)
scaffold0018 (35-78)||(157988-158031)
[»] chr4 (10 HSPs)
chr4 (13-75)||(15173424-15173486)
chr4 (13-78)||(43505839-43505902)
chr4 (17-70)||(30377810-30377863)
chr4 (20-78)||(3155494-3155552)
chr4 (36-78)||(44138450-44138492)
chr4 (20-78)||(44863083-44863141)
chr4 (25-78)||(17204019-17204072)
chr4 (20-73)||(35571953-35572006)
chr4 (13-73)||(54069541-54069602)
chr4 (18-70)||(50298430-50298482)
[»] scaffold0012 (1 HSPs)
scaffold0012 (13-47)||(207705-207739)


Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 13 - 153
Target Start/End: Complemental strand, 39980675 - 39980535
Alignment:
Q  13 atgcaaacttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgttataaagctgttcagtcaccataaaattacataaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  39980675 atgcaaacttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgttataaagctgttcagtcaccataaaattacagaaa 39980576  T
Q  113 aatcaattattgaagcttacgttatacaacttcaattccag 153  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  39980575 aatcaattattgaagcttacgttatacaacttcaattccag 39980535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 39979393 - 39979286
Alignment:
Q  13 atgcaaacttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgttataaagctgttcagtcaccataaaattacataaa 112  Q
    ||||||||||||||| ||||| |||||||||| |||||||||  |||||| |||||||||  |||| ||||| |||||| ||  |||||||||| | | |    
T  39979393 atgcaaacttatacacaagtgtttatcatgatgagtgtttgtgttataagttgcaaataaattgttgtaaagatgttcaatcttcataaaattagagaga 39979294  T
Q  113 aatcaatt 120  Q
    ||||||||    
T  39979293 aatcaatt 39979286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 31365396 - 31365461
Alignment:
Q  13 atgcaaacttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    |||||| |||||||||||||||||||||||||||    |||| |||||||||||||||||||||||    
T  31365396 atgcaagcttatacataagtgcttatcatgataatcacttgtgctataagctgcaaataagctgtt 31365461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 246 - 291
Target Start/End: Complemental strand, 39980443 - 39980398
Alignment:
Q  246 gaggatgacagaacttagtcttaagaagttccttgatatcttctct 291  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  39980443 gaggatgacagaacttagtcttaagaagctccttgatatcttctct 39980398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 29520602 - 29520658
Alignment:
Q  13 atgcaaacttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaa 69  Q
    |||||| ||||||||||||||||||| ||||||||||||| | ||||||||||||||    
T  29520602 atgcaagcttatacataagtgcttattatgataagtgtttatgctataagctgcaaa 29520658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 2719400 - 2719350
Alignment:
Q  28 taagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    |||||||||||||||||||| |||||| |||||||||| ||||||||||||    
T  2719400 taagtgcttatcatgataagcgtttgtgctataagctgtaaataagctgtt 2719350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 28795963 - 28796021
Alignment:
Q  20 cttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    |||||||||||||| |||||||||||| ||||||| |||||||||| ||||||| ||||    
T  28795963 cttatacataagtgtttatcatgataaatgtttgtgctataagctgtaaataagttgtt 28796021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 46778361 - 46778411
Alignment:
Q  23 atacataagtgcttatcatgataagtgtttgtcctataagctgcaaataag 73  Q
    ||||||||| |||||||||||||||||||||| ||||||| ||||||||||    
T  46778361 atacataagcgcttatcatgataagtgtttgtactataaggtgcaaataag 46778411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 1508705 - 1508770
Alignment:
Q  13 atgcaaacttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    |||||| |||||||||||| |||||||||||||||   |||| ||||||| |||||||||||||||    
T  1508705 atgcaagcttatacataagcgcttatcatgataagcacttgtgctataagttgcaaataagctgtt 1508770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 4400992 - 4400940
Alignment:
Q  13 atgcaaacttatacataagtgcttatcatgataagtgtttgtcctataagctg 65  Q
    |||||||||||||||||||| ||||| || |||||||||||| ||||||||||    
T  4400992 atgcaaacttatacataagtacttataataataagtgtttgtgctataagctg 4400940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 5331240 - 5331184
Alignment:
Q  13 atgcaaacttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaa 69  Q
    |||||| ||||||||||||||||||| || |||||||||| | ||||||||||||||    
T  5331240 atgcaagcttatacataagtgcttattatcataagtgtttatgctataagctgcaaa 5331184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 30956757 - 30956815
Alignment:
Q  20 cttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    ||||| ||||| ||||||||||||||||   |||| |||||||||||||||||||||||    
T  30956757 cttatgcataaatgcttatcatgataagcccttgtgctataagctgcaaataagctgtt 30956815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 30972569 - 30972627
Alignment:
Q  20 cttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    ||||| ||||| ||||||||||||||||   |||| |||||||||||||||||||||||    
T  30972569 cttatgcataaatgcttatcatgataagcccttgtgctataagctgcaaataagctgtt 30972627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 35959587 - 35959645
Alignment:
Q  20 cttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    ||||||||||||  |||||||||||||| | ||||  ||||||||||||||||||||||    
T  35959587 cttatacataagctcttatcatgataagagcttgtgatataagctgcaaataagctgtt 35959645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 35328288 - 35328338
Alignment:
Q  24 tacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagct 75  Q
    |||||||||||||||||| ||||| | |||| ||||||||||||||||||||    
T  35328288 tacataagtgcttatcataataagcgcttgt-ctataagctgcaaataagct 35328338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 52597637 - 52597579
Alignment:
Q  20 cttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtta 79  Q
    |||||||||||||||| ||||||||||||| ||||  ||||||||||| | |||||||||    
T  52597637 cttatacataagtgct-atcatgataagtgcttgtgttataagctgcagacaagctgtta 52597579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 29002959 - 29003013
Alignment:
Q  18 aacttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataa 72  Q
    |||||||||||||||| ||||||||||||  | || | |||||||||||||||||    
T  29002959 aacttatacataagtgtttatcatgataaacgcttttactataagctgcaaataa 29003013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 47132308 - 47132258
Alignment:
Q  28 taagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    |||||||||||||||||||||| |||| ||||||| || ||||||| ||||    
T  47132308 taagtgcttatcatgataagtgcttgtgctataaggtgaaaataagttgtt 47132258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 23816004 - 23815975
Alignment:
Q  18 aacttatacataagtgcttatcatgataag 47  Q
    ||||||||||||||||||||||||||||||    
T  23816004 aacttatacataagtgcttatcatgataag 23815975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 34034104 - 34034052
Alignment:
Q  26 cataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    |||||||||||||||||||||| |  ||| |||||||||| ||||||| ||||    
T  34034104 cataagtgcttatcatgataagcgcctgttctataagctgaaaataagttgtt 34034052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 37389150 - 37389122
Alignment:
Q  20 cttatacataagtgcttatcatgataagt 48  Q
    |||||||||||||||||||||||||||||    
T  37389150 cttatacataagtgcttatcatgataagt 37389122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 47249604 - 47249644
Alignment:
Q  35 ttatcatgataagtgtttgtcctataagctgcaaataagct 75  Q
    ||||||||||||||| ||||  |||||||||||||||||||    
T  47249604 ttatcatgataagtgcttgtgttataagctgcaaataagct 47249644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 14956419 - 14956484
Alignment:
Q  13 atgcaaacttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    |||||| |||||||||||||||||||||||||||| | |||| |||||||||||||||||| ||||    
T  14956419 atgcaagcttatacataagtgcttatcatgataagcgattgtgctataagctgcaaataagttgtt 14956484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 41475181 - 41475239
Alignment:
Q  20 cttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    |||||||||||||||||||||||| ||||||||||| |||||| |||||||||| ||||    
T  41475181 cttatacataagtgcttatcatgacaagtgtttgtcttataagttgcaaataagttgtt 41475239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 42386313 - 42386358
Alignment:
Q  246 gaggatgacagaacttagtcttaagaagttccttgatatcttctct 291  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||    
T  42386313 gaggatgacagaacttagtcctaagaagctccttgatatcttctct 42386358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 1058205 - 1058263
Alignment:
Q  20 cttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    |||||||||||| |||||||||  |||| | |||| |||||||||||||||||||||||    
T  1058205 cttatacataagcgcttatcatagtaagcgcttgtgctataagctgcaaataagctgtt 1058263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 41821501 - 41821439
Alignment:
Q  15 gcaaacttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtta 79  Q
    |||| ||||||||||||||||||||||||||||   |||| |  |||||||||||||||||||||    
T  41821501 gcaagcttatacataagtgcttatcatgataagcacttgtgc--taagctgcaaataagctgtta 41821439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 900816 - 900868
Alignment:
Q  19 acttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaata 71  Q
    |||| |||||||||| ||||||||||||| |||||| ||||||| ||||||||    
T  900816 acttttacataagtgtttatcatgataagcgtttgtgctataagatgcaaata 900868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 28763310 - 28763254
Alignment:
Q  22 tatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    ||||||||| | ||||||||||||||||||| | ||||||| | |||||||||||||    
T  28763310 tatacataaattcttatcatgataagtgtttatgctataagttacaaataagctgtt 28763254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 41589633 - 41589579
Alignment:
Q  18 aacttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataag 73  Q
    |||||||| ||||| |||||||||||||| || |||| ||||||||||||||||||    
T  41589633 aacttata-ataagcgcttatcatgataaatgcttgtgctataagctgcaaataag 41589579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 8216829 - 8216787
Alignment:
Q  20 cttatacataagtgcttatcatgataagtgtttgtcctataag 62  Q
    |||||||||||||| |||||||||||||||||| | |||||||    
T  8216829 cttatacataagtgtttatcatgataagtgtttatgctataag 8216787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 34236111 - 34236053
Alignment:
Q  20 cttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    ||||| |||||| ||||||||||||||  ||||||  ||||||||||||||||| ||||    
T  34236111 cttatccataagggcttatcatgataaccgtttgtgttataagctgcaaataagttgtt 34236053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 40981057 - 40981011
Alignment:
Q  32 tgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    ||||||||| |||||| | |||| |||||||||||||||||||||||    
T  40981057 tgcttatcaagataagcgcttgtgctataagctgcaaataagctgtt 40981011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 41442558 - 41442600
Alignment:
Q  22 tatacataagtgcttatcatgataagtgtttgtcctataagct 64  Q
    ||||||||||| ||||||||||||||||||| | |||||||||    
T  41442558 tatacataagtacttatcatgataagtgtttatgctataagct 41442600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 15180487 - 15180422
Alignment:
Q  13 atgcaaacttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    ||||||||||||| |||||| || ||||||||| | | |||| ||||||||| |||||||| ||||    
T  15180487 atgcaaacttatagataagttctcatcatgatacgcgcttgtgctataagcttcaaataagttgtt 15180422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 35749688 - 35749737
Alignment:
Q  13 atgcaaacttatacataagtgcttatcatgataagtgtttgtcctataag 62  Q
    ||||||||||||||| || ||||||| ||||||||||||| | |||||||    
T  35749688 atgcaaacttatacaaaaatgcttattatgataagtgtttatgctataag 35749737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 38750304 - 38750239
Alignment:
Q  13 atgcaaacttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    |||||| |||||||||||| |||||||||||||||||  ||| ||  ||||| |||||||| ||||    
T  38750304 atgcaagcttatacataagcgcttatcatgataagtgcatgtacttcaagcttcaaataagttgtt 38750239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 15179098 - 15179034
Alignment:
Q  13 atgcaaacttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgt 77  Q
    |||||| |||||||||||| ||| ||||||||| |   |||| ||||||| ||||||||||||||    
T  15179098 atgcaatcttatacataagcgctcatcatgatatgcacttgtgctataagttgcaaataagctgt 15179034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 19460508 - 19460565
Alignment:
Q  21 ttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    |||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||    
T  19460508 ttatacataagtgcttatcatgataagcatttgtgctataagctgcaaataagctgtt 19460565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 32372561 - 32372505
Alignment:
Q  22 tatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    |||||||||| ||||||||||||||||| |||| |||||||||||||||||| ||||    
T  32372561 tatacataagggcttatcatgataagtgcttgtgctataagctgcaaataagttgtt 32372505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 7319142 - 7319200
Alignment:
Q  20 cttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    ||||| |||||||||||||||||||||| | |||| |||||||||| ||||||||||||    
T  7319142 cttatgcataagtgcttatcatgataagcgcttgtgctataagctgtaaataagctgtt 7319200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 24030547 - 24030591
Alignment:
Q  34 cttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    |||||||||||||||| |||| |||||||||||||||||||||||    
T  24030547 cttatcatgataagtgcttgtgctataagctgcaaataagctgtt 24030591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 34736647 - 34736705
Alignment:
Q  20 cttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    ||||| |||||||| |||||||| ||||||||||| |||||||||||| ||||| ||||    
T  34736647 cttatgcataagtgattatcatggtaagtgtttgtgctataagctgcagataagttgtt 34736705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 32703574 - 32703627
Alignment:
Q  25 acataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    ||||||| |||||||||||||| || |||| |||||||||||||||||| ||||    
T  32703574 acataagcgcttatcatgataaatgcttgtgctataagctgcaaataagttgtt 32703627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 39477884 - 39477844
Alignment:
Q  36 tatcatgataagtgtttgtcctataagctgcaaataagctg 76  Q
    |||||||||||| | ||||||||||||||||||||||||||    
T  39477884 tatcatgataagcgcttgtcctataagctgcaaataagctg 39477844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 7984927 - 7984869
Alignment:
Q  20 cttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    |||| ||||||| ||||||||||||||| |  ||| |||||||||||||||||| ||||    
T  7984927 cttaaacataagcgcttatcatgataagcgcatgtactataagctgcaaataagttgtt 7984869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 28776924 - 28776866
Alignment:
Q  20 cttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    ||||||||||||  |||||||||||||||| ||   |||||||||||||||||| ||||    
T  28776924 cttatacataagcacttatcatgataagtgcttaggctataagctgcaaataagttgtt 28776866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 70
Target Start/End: Complemental strand, 40426689 - 40426651
Alignment:
Q  32 tgcttatcatgataagtgtttgtcctataagctgcaaat 70  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  40426689 tgcttatcatgataagtgcttgtgctataagctgcaaat 40426651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 16937991 - 16938024
Alignment:
Q  13 atgcaaacttatacataagtgcttatcatgataa 46  Q
    ||||||||| ||||||||||||||||||||||||    
T  16937991 atgcaaactaatacataagtgcttatcatgataa 16938024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 26005362 - 26005427
Alignment:
Q  13 atgcaaacttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    |||||| ||||||||||||   ||||||| |||||||||||| ||||||||| | |||||| ||||    
T  26005362 atgcaagcttatacataagcaattatcataataagtgtttgtgctataagcttctaataagttgtt 26005427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 30291209 - 30291160
Alignment:
Q  21 ttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaat 70  Q
    |||| |||||| | |||||||||||||||||| | |||||||||||||||    
T  30291209 ttatgcataagcgtttatcatgataagtgtttatgctataagctgcaaat 30291160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 32941416 - 32941352
Alignment:
Q  13 atgcaaacttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    |||||| ||||||| |||| |||||||||| |||||| || | ||||||||||| |||||||||||    
T  32941416 atgcaagcttatacgtaagcgcttatcatggtaagtgctt-tgctataagctgctaataagctgtt 32941352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 39105413 - 39105360
Alignment:
Q  20 cttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataag 73  Q
    |||||||||||| |||||||||||||||   || | ||||||||||||||||||    
T  39105413 cttatacataagcgcttatcatgataagcacttatgctataagctgcaaataag 39105360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 291
Target Start/End: Original strand, 1752292 - 1752328
Alignment:
Q  255 agaacttagtcttaagaagttccttgatatcttctct 291  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  1752292 agaacttagtcctaagaagctccttgatatcttctct 1752328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 6096492 - 6096437
Alignment:
Q  20 cttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    |||||||||||||||||||||||||||| | ||   |||| ||||||||||||| ||||    
T  6096492 cttatacataagtgcttatcatgataagagctt---ctatgagctgcaaataagttgtt 6096437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 35299670 - 35299618
Alignment:
Q  26 cataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    |||||||||  ||||||||||||| |||| || || |||||||||||||||||    
T  35299670 cataagtgccgatcatgataagtgcttgtgctctatgctgcaaataagctgtt 35299618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 6538463 - 6538401
Alignment:
Q  13 atgcaaacttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagct 75  Q
    |||||| |||||||||||| ||||||||| ||||||| |||| ||||||||||||||||||||    
T  6538463 atgcaagcttatacataagcgcttatcattataagtgcttgtgctataagctgcaaataagct 6538401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 18076142 - 18076083
Alignment:
Q  13 atgcaaacttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataa 72  Q
    |||||| ||||||||||||||||||| |||||||| | |||| |||||||||||||||||    
T  18076142 atgcaagcttatacataagtgcttattatgataagcgcttgtgctataagctgcaaataa 18076083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 19411614 - 19411669
Alignment:
Q  20 cttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagct 75  Q
    |||||||||||| |||||| |||| |||| ||||| ||||||||| ||||||||||    
T  19411614 cttatacataagagcttattatgagaagtttttgtgctataagctccaaataagct 19411669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 848007 - 847949
Alignment:
Q  20 cttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    |||||||||||| |||||| ||||||| || ||||| ||||||||||||| ||| ||||    
T  848007 cttatacataagcgcttattatgataactgcttgtcttataagctgcaaaaaagttgtt 847949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 34430655 - 34430597
Alignment:
Q  20 cttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    |||||||||||| || ||||||||||||   |||| |||||||||||||||||| ||||    
T  34430655 cttatacataagcgcctatcatgataagcacttgtgctataagctgcaaataagatgtt 34430597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 10401137 - 10401173
Alignment:
Q  18 aacttatacataagtgcttatcatgataagtgtttgt 54  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  10401137 aacttatacataagcgcttatcatgataagtgcttgt 10401173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 41407240 - 41407182
Alignment:
Q  20 cttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    |||||||||||||||||||||||||||| | |||| |||||||||||||| ||||||||    
T  41407240 cttatacataagtgcttatcatgataagcgcttgtgctataagctgcaaacaagctgtt 41407182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 32592533 - 32592468
Alignment:
Q  13 atgcaaacttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    |||||| |||||||||||| |||||| ||||||||||||||| ||||||||| |||||||| ||||    
T  32592533 atgcaagcttatacataagcgcttataatgataagtgtttgtgctataagctacaaataagttgtt 32592468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 39659635 - 39659697
Alignment:
Q  16 caaacttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    |||||||||||||||| |||||||||||||||  ||||| || ||||||||||||||| ||||    
T  39659635 caaacttatacataagcgcttatcatgataagcatttgtgctctaagctgcaaataagttgtt 39659697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 19608746 - 19608803
Alignment:
Q  20 cttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgt 77  Q
    ||||||||||||||||||||||| || ||| |||| |||||||||||||||| |||||    
T  19608746 cttatacataagtgcttatcatggtatgtgcttgtgctataagctgcaaatatgctgt 19608803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 42659282 - 42659335
Alignment:
Q  20 cttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataag 73  Q
    |||||||||||| |||||||||||||||||| ||| |||| |||||||||||||    
T  42659282 cttatacataagcgcttatcatgataagtgtgtgtgctattagctgcaaataag 42659335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 43570352 - 43570307
Alignment:
Q  33 gcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||    
T  43570352 gcttatcatgataagtgcttgtgctataagctgcaaataagctgtt 43570307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 1625850 - 1625799
Alignment:
Q  20 cttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaata 71  Q
    ||||||| |||||||||||||| |||||||| ||| ||||||||||||||||    
T  1625850 cttatacttaagtgcttatcataataagtgtgtgtactataagctgcaaata 1625799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 27695730 - 27695776
Alignment:
Q  32 tgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    ||||||||||||||||||||||| ||||||||| |||||||| ||||    
T  27695730 tgcttatcatgataagtgtttgtgctataagctacaaataagttgtt 27695776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 31744308 - 31744247
Alignment:
Q  15 gcaaacttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    |||| |||||||||||| |||||||||  |||||| |||| ||||||||| |||||||||||||    
T  31744308 gcaagcttatacataagcgcttatcat--taagtgcttgtgctataagctacaaataagctgtt 31744247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 9395079 - 9395024
Alignment:
Q  20 cttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagct 75  Q
    ||||||||| |||| ||||||||||||| | |||| |||||||| |||||||||||    
T  9395079 cttatacatgagtgtttatcatgataagagcttgtgctataagccgcaaataagct 9395024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 11863870 - 11863812
Alignment:
Q  20 cttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    ||||| |||||| ||||||||||| |||||||||| || ||||||| ||||||| ||||    
T  11863870 cttatgcataagcgcttatcatgacaagtgtttgtgctgtaagctgaaaataagttgtt 11863812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 41170469 - 41170415
Alignment:
Q  28 taagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgttataa 82  Q
    ||||| |||||||||||||||| || | |||||||||| || |||||||||||||    
T  41170469 taagtacttatcatgataagtgcttatgctataagctgaaattaagctgttataa 41170415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 15757810 - 15757855
Alignment:
Q  33 gcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    ||||||||||||||| | |||| |||||||||| ||||||||||||    
T  15757810 gcttatcatgataagcgcttgtgctataagctgaaaataagctgtt 15757855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 26626824 - 26626767
Alignment:
Q  21 ttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    ||||||||||||  ||||||||||||| | || | |||||||||||||||||| ||||    
T  26626824 ttatacataagtatttatcatgataagagcttatgctataagctgcaaataagttgtt 26626767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 48
Target Start/End: Original strand, 32364845 - 32364873
Alignment:
Q  20 cttatacataagtgcttatcatgataagt 48  Q
    |||||||||||||||||||||||||||||    
T  32364845 cttatacataagtgcttatcatgataagt 32364873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 44255498 - 44255442
Alignment:
Q  20 cttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctg 76  Q
    |||||||| ||| ||||||||||| |||||||||| | || |||| |||||||||||    
T  44255498 cttatacagaagcgcttatcatgagaagtgtttgtgcaattagctccaaataagctg 44255442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 9210574 - 9210509
Alignment:
Q  13 atgcaaacttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    |||||| |||||||||||| | |||||||||||| ||||||  |||||||||||||||||||||||    
T  9210574 atgcaagcttatacataagcgattatcatgataaatgtttgcgctataagctgcaaataagctgtt 9210509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 23989608 - 23989674
Alignment:
Q  13 atgcaaacttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtta 79  Q
    |||||||||||||||||||  |||||||||||||| |  ||| |||||||||||||||||| |||||    
T  23989608 atgcaaacttatacataagaacttatcatgataagcgcgtgtactataagctgcaaataagttgtta 23989674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 33128696 - 33128638
Alignment:
Q  20 cttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    ||||| ||||||  ||||||||||||||||||||| || ||||||||||||||||||||    
T  33128696 cttatgcataagcacttatcatgataagtgtttgtgctgtaagctgcaaataagctgtt 33128638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 21568752 - 21568817
Alignment:
Q  13 atgcaaacttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    |||||| ||||||||||||||||||||||||||||   || | |||||||||||||| ||||||||    
T  21568752 atgcaagcttatacataagtgcttatcatgataagcacttatgctataagctgcaaacaagctgtt 21568817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 47795905 - 47795848
Alignment:
Q  21 ttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    ||||||||||||| ||||||||||||| | || | |||||||||||||||||||||||    
T  47795905 ttatacataagtggttatcatgataagcgcttatgctataagctgcaaataagctgtt 47795848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 38500051 - 38500107
Alignment:
Q  22 tatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    |||||||||| ||||||||||||||| | |||| |||||| ||||||||||||||||    
T  38500051 tatacataagcgcttatcatgataagcgcttgtgctataaactgcaaataagctgtt 38500107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 45806601 - 45806657
Alignment:
Q  13 atgcaaacttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaa 69  Q
    |||||| ||||||||||||||||||| |||||||||| || | ||||||||||||||    
T  45806601 atgcaagcttatacataagtgcttattatgataagtgcttttgctataagctgcaaa 45806657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 20428406 - 20428351
Alignment:
Q  20 cttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagct 75  Q
    |||||||||||| ||||||||||| |||||||||| ||||||||| ||| ||||||    
T  20428406 cttatacataagcgcttatcatgagaagtgtttgtgctataagctccaactaagct 20428351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 21619349 - 21619306
Alignment:
Q  27 ataagtgcttatcatgataagtgtttgtcctataagctgcaaat 70  Q
    ||||||||||||||||||||||| |||| |||||||||||||||    
T  21619349 ataagtgcttatcatgataagtgcttgtgctataagctgcaaat 21619306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 33552942 - 33553000
Alignment:
Q  20 cttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    |||||||||||| |||||||||| |||||| |||| | |||||||||||||||| ||||    
T  33552942 cttatacataagcgcttatcatggtaagtgcttgtgcaataagctgcaaataagttgtt 33553000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 46078086 - 46078028
Alignment:
Q  20 cttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    |||||||||||| ||||||||||||| |||||||| || |||| |||| ||||||||||    
T  46078086 cttatacataagcgcttatcatgatatgtgtttgtgctttaagttgcatataagctgtt 46078028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 18865178 - 18865239
Alignment:
Q  17 aaacttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    ||||||||| ||||   |||||||||||||| |||||| |||||||||||||||||| ||||    
T  18865178 aaacttataaataaacacttatcatgataagcgtttgtgctataagctgcaaataagttgtt 18865239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 78
Target Start/End: Complemental strand, 48469968 - 48469931
Alignment:
Q  41 tgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    |||||||||||||| |||||||||||||||||||||||    
T  48469968 tgataagtgtttgtgctataagctgcaaataagctgtt 48469931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 20881760 - 20881815
Alignment:
Q  23 atacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    ||||||||| ||||||||||||||||| |||| |||||| || |||||||| ||||    
T  20881760 atacataagagcttatcatgataagtgcttgtgctataaactacaaataagttgtt 20881815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 46407425 - 46407472
Alignment:
Q  30 agtgcttatcatgataagtgtttgtcctataagctgcaaataagctgt 77  Q
    |||||||||||||||||||| ||   ||||||||||||||||||||||    
T  46407425 agtgcttatcatgataagtgcttacactataagctgcaaataagctgt 46407472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 3308383 - 3308441
Alignment:
Q  20 cttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    ||||||||||||  |||||||||| ||||  |||| ||||||||| |||||||||||||    
T  3308383 cttatacataagcacttatcatgaaaagtacttgtgctataagctccaaataagctgtt 3308441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 7612408 - 7612358
Alignment:
Q  20 cttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaat 70  Q
    |||||||||| | ||||||||||||||||| || | |||||||||||||||    
T  7612408 cttatacatatgagcttatcatgataagtgcttatgctataagctgcaaat 7612358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 33673027 - 33672975
Alignment:
Q  20 cttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataa 72  Q
    |||||||||||| ||||||||| |||| |  |||| |||||||||||||||||    
T  33673027 cttatacataagcgcttatcataataaatacttgtgctataagctgcaaataa 33672975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 46139877 - 46139833
Alignment:
Q  34 cttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    |||||||||||||||| ||||  ||||||||||||||||| ||||    
T  46139877 cttatcatgataagtgcttgtgttataagctgcaaataagttgtt 46139833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 38247392 - 38247341
Alignment:
Q  20 cttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaata 71  Q
    ||||||||||||||| |||||||||||||| |||| ||||||||||||||||    
T  38247392 cttatacataagtgcatatcatgataagtgcttgtgctataagctgcaaata 38247341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 14331728 - 14331670
Alignment:
Q  20 cttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    |||||||||||||||||||||||| ||| | |||| ||||||||| |||||||||||||    
T  14331728 cttatacataagtgcttatcatgagaagcgcttgtgctataagcttcaaataagctgtt 14331670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 45975638 - 45975584
Alignment:
Q  21 ttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagct 75  Q
    ||||||||||| ||||||||||||||||||||||  |||||||| ||||||||||    
T  45975638 ttatacataagggcttatcatgataagtgtttgtgttataagctacaaataagct 45975584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 5894284 - 5894342
Alignment:
Q  20 cttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    |||||||||||| |||||||||||||||   |||| ||||||||| |||||||||||||    
T  5894284 cttatacataagcgcttatcatgataagcacttgtgctataagcttcaaataagctgtt 5894342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 9656595 - 9656537
Alignment:
Q  20 cttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    |||||||||| |||||||||||||||||||||||| |||  ||||| ||| ||||||||    
T  9656595 cttatacataggtgcttatcatgataagtgtttgtgctaatagctgtaaagaagctgtt 9656537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 14576784 - 14576842
Alignment:
Q  20 cttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    |||||| ||||||||||||||||||||| | |||| |||||||||| ||||||| ||||    
T  14576784 cttataaataagtgcttatcatgataagagcttgtgctataagctggaaataagatgtt 14576842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 1510434 - 1510498
Alignment:
Q  14 tgcaaacttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    ||||| |||||| |||||||||||||| |||||| | |||| ||||||| | |||||||||||||    
T  1510434 tgcaagcttatatataagtgcttatcaagataagcgcttgtgctataagatacaaataagctgtt 1510498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 5741604 - 5741548
Alignment:
Q  17 aaacttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataag 73  Q
    ||||||||||||||| ||||||||||||| ||| |||| ||||||||  ||||||||    
T  5741604 aaacttatacataagcgcttatcatgataggtgcttgtgctataagccacaaataag 5741548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 41195322 - 41195378
Alignment:
Q  17 aaacttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataag 73  Q
    ||||||||||||||| | |||||| |||||| | |||| ||||||||||||||||||    
T  41195322 aaacttatacataagcgattatcaggataagcgcttgtgctataagctgcaaataag 41195378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 41505612 - 41505568
Alignment:
Q  34 cttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    |||||||| ||||| |||||| |||||||||||||||||||||||    
T  41505612 cttatcatcataagcgtttgtgctataagctgcaaataagctgtt 41505568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 1829074 - 1829133
Alignment:
Q  19 acttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    ||||||||||||| |||||||||||||||||||| | ||||| | | |||||||| ||||    
T  1829074 acttatacataagcgcttatcatgataagtgtttatgctataggtttcaaataagttgtt 1829133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 37473338 - 37473280
Alignment:
Q  20 cttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    ||||||||||||||||| ||||||||||   |||| | |||||||||||||||| ||||    
T  37473338 cttatacataagtgcttgtcatgataagaacttgtgcaataagctgcaaataagttgtt 37473280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 38116306 - 38116356
Alignment:
Q  20 cttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaat 70  Q
    |||||||||||| ||||||||||||||| |  ||| |||||||||||||||    
T  38116306 cttatacataagcgcttatcatgataagcgcatgtactataagctgcaaat 38116356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 44932056 - 44932094
Alignment:
Q  13 atgcaaacttatacataagtgcttatcatgataagtgtt 51  Q
    |||||| ||||||| ||||||||||||||||||||||||    
T  44932056 atgcaagcttatacctaagtgcttatcatgataagtgtt 44932094  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 47498964 - 47499022
Alignment:
Q  20 cttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    |||||||| ||| |||||||||||||||   |||| |||||||||||||||||| ||||    
T  47498964 cttatacacaagcgcttatcatgataagcacttgtgctataagctgcaaataagttgtt 47499022  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 1509698 - 1509633
Alignment:
Q  13 atgcaaacttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    |||||| |||||| |||||  |||||||||||||||| |||| || ||||||  ||||||||||||    
T  1509698 atgcaagcttatatataagcacttatcatgataagtgattgtgctgtaagctaaaaataagctgtt 1509633  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 5720923 - 5720867
Alignment:
Q  17 aaacttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataag 73  Q
    ||||||||||||||| ||||||||||||| ||| ||||  |||||||  ||||||||    
T  5720923 aaacttatacataagcgcttatcatgataggtgcttgtgttataagccacaaataag 5720867  T

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Target: scaffold0018 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 78
Target Start/End: Complemental strand, 158031 - 157988
Alignment:
Q  35 ttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    ||||||| |||||||||||| |||||||||||||||||||||||    
T  158031 ttatcatcataagtgtttgtgctataagctgcaaataagctgtt 157988  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 15173424 - 15173486
Alignment:
Q  13 atgcaaacttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagct 75  Q
    |||||| |||||||||| | ||||||||||||||| |||||| ||| |||||| |||||||||    
T  15173424 atgcaagcttatacatatgcgcttatcatgataagcgtttgtgctacaagctgaaaataagct 15173486  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 43505902 - 43505839
Alignment:
Q  13 atgcaaacttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    |||||| |||||||||||||||||||||||||  | |||||| ||||||| |||||||||| ||||    
T  43505902 atgcaagcttatacataagtgcttatcatgat--gcgtttgtgctataagttgcaaataagttgtt 43505839  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 30377810 - 30377863
Alignment:
Q  17 aaacttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaat 70  Q
    ||||||||||| ||||||||||||||||||   ||||| |||||||||||||||    
T  30377810 aaacttatacacaagtgcttatcatgataaacatttgtgctataagctgcaaat 30377863  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 3155552 - 3155494
Alignment:
Q  20 cttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    ||||||||||  |||||||||||||||| | |||| |||||||||||| ||||| ||||    
T  3155552 cttatacatacatgcttatcatgataagcgcttgtactataagctgcagataagttgtt 3155494  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 78
Target Start/End: Complemental strand, 44138492 - 44138450
Alignment:
Q  36 tatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    |||||||||||||| |||| ||| |||||||||||||||||||    
T  44138492 tatcatgataagtgcttgtactaaaagctgcaaataagctgtt 44138450  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 44863083 - 44863141
Alignment:
Q  20 cttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    ||||| ||||||  |||||||||| ||||| |||| |||||||||||||||||| ||||    
T  44863083 cttatgcataagcacttatcatgacaagtgcttgtgctataagctgcaaataagttgtt 44863141  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 17204072 - 17204019
Alignment:
Q  25 acataagtgcttatcatgataagtgtttgtcctataagctgcaaataagctgtt 78  Q
    ||||||| | ||||| ||||||||| |||| |||||||||||||||||| ||||    
T  17204072 acataagcggttatcgtgataagtgcttgttctataagctgcaaataagttgtt 17204019  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 35571953 - 35572006
Alignment:
Q  20 cttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaataag 73  Q
    ||||||||||||||||| |||||||||    |||| ||||||||||||||||||    
T  35571953 cttatacataagtgcttgtcatgataaccacttgtgctataagctgcaaataag 35572006  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 54069541 - 54069602
Alignment:
Q  13 atgcaaacttatacataagtgctt-atcatgataagtgtttgtcctataagctgcaaataag 73  Q
    |||||| ||||||||||||||||| ||||   ||||||||||| |||||||||| |||||||    
T  54069541 atgcaagcttatacataagtgctttatcacagtaagtgtttgtgctataagctgaaaataag 54069602  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 50298482 - 50298430
Alignment:
Q  18 aacttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaat 70  Q
    ||||||||||||||   |||||||||||||||||| | ||||||||| |||||    
T  50298482 aacttatacataagcatttatcatgataagtgtttatgctataagcttcaaat 50298430  T

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Target: scaffold0012 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 207705 - 207739
Alignment:
Q  13 atgcaaacttatacataagtgcttatcatgataag 47  Q
    |||||| ||||||||||||||||||||||||||||    
T  207705 atgcaagcttatacataagtgcttatcatgataag 207739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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