View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7786_low_11 (Length: 290)
Name: NF7786_low_11
Description: NF7786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7786_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 1772775 - 1772519
Alignment:
| Q |
1 |
agaaggttgctgaggcagaaacagatacagatacagaggaaaatgctcctttggaaaatgctccttcggaggaagttcaagatgtatctaaagataattc |
100 |
Q |
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| T |
1772775 |
agaaggttgctgaggcagaaacagatacagatacagaggaaaatgctcctt---------------cggaggaagttcaagatgtatctaaagataattc |
1772691 |
T |
|
| Q |
101 |
agaagaaactgctgagcctactgataccaatgagattctggtggaggatgtcaaagagattcctgttgaggactctggtaaggaaaatgacaaggagcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1772690 |
agaagaaactgctgagcctactgataccaatgagattctggtggaggatgtcaaagagattcctgttgaggactctggtaaggaaaatgacaaggagcca |
1772591 |
T |
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| Q |
201 |
tctaaagcaactgaacaaccatcaaaggagtcaactgagcaagacgcttcttctggagacaaacaacctgat |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1772590 |
tctaaagcaactgaacaaccatcaaaggagtcaactgagcaagacgcttcttctggagacaaacaacctgat |
1772519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 53 - 169
Target Start/End: Original strand, 2534233 - 2534349
Alignment:
| Q |
53 |
ggaaaatgctccttcggaggaagttcaagatgtatctaaagataattcagaagaaactgctgagcctactgataccaatgagattctggtggaggatgtc |
152 |
Q |
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|||||| ||| |||| |||||||||||||||||||||||||||||| ||||||||||| |||| || || |||||||| ||||||| || ||||||| | |
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| T |
2534233 |
ggaaaacgcttcttcagaggaagttcaagatgtatctaaagataatacagaagaaactactgaccccacggataccaaagagattcctgttgaggatgcc |
2534332 |
T |
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| Q |
153 |
aaagagattcctgttga |
169 |
Q |
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| T |
2534333 |
aaagagattcatgttga |
2534349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 53 - 138
Target Start/End: Complemental strand, 2525689 - 2525604
Alignment:
| Q |
53 |
ggaaaatgctccttcggaggaagttcaagatgtatctaaagataattcagaagaaactgctgagcctactgataccaatgagattc |
138 |
Q |
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||||||||||| ||| |||||| ||||||||| |||||||||||||||||||||||| ||||||||||| |||||||| ||||||| |
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| T |
2525689 |
ggaaaatgctcattctgaggaaattcaagatgaatctaaagataattcagaagaaacggctgagcctaccgataccaaagagattc |
2525604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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