View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7786_low_12 (Length: 286)
Name: NF7786_low_12
Description: NF7786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7786_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 15 - 269
Target Start/End: Original strand, 7507734 - 7507988
Alignment:
| Q |
15 |
actacttttttagtgggaccgataggctgatcaacatcattataggtcacttctactcgctcttcaaaagttcttgcatgaatctttttgcacaaagttc |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7507734 |
actacttttttagtgggaccgataggctgatcaacatcattataggtcacttctactcgctcttcaaaagttcttgcatgaatctttttgcacaaagttc |
7507833 |
T |
|
| Q |
115 |
tcccacgagtttttctttgagatattcctacaattttataaagtaattaacatgacaaaacaatatcacatgttggttaccaatatataaagaatacatg |
214 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7507834 |
tcccacgagtttttctttgagatattcctacaattttataaagtaattaacatgacaaaacaatatcacatgttggttaccaatatataaagaatacatg |
7507933 |
T |
|
| Q |
215 |
aaatcattattatgaaatacaaaactaattaccttgttcttcgtctctatttgtg |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7507934 |
aaatcattattatgaaatacaaaactaattaccttgttcttcgtctctatttgtg |
7507988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 15 - 269
Target Start/End: Original strand, 9819500 - 9819754
Alignment:
| Q |
15 |
actacttttttagtgggaccgataggctgatcaacatcattataggtcacttctactcgctcttcaaaagttcttgcatgaatctttttgcacaaagttc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
9819500 |
actacttttttagtgggaccgataggctgatcaacatcattataggtcacttctactcgctcttcaaaagttcttgcatgaatctttctgcacaaagttc |
9819599 |
T |
|
| Q |
115 |
tcccacgagtttttctttgagatattcctacaattttataaagtaattaacatgacaaaacaatatcacatgttggttaccaatatataaagaatacatg |
214 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9819600 |
tcccgcgagtttttctttgagatattcctacaattttataaagtaattaacatgacaaaacaatatcacatgttggttaccaatatataaagaatacatg |
9819699 |
T |
|
| Q |
215 |
aaatcattattatgaaatacaaaactaattaccttgttcttcgtctctatttgtg |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9819700 |
aaatcattattatgaaatacaaaactaattaccttgttcttcttctctatttgtg |
9819754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 15 - 269
Target Start/End: Original strand, 19484327 - 19484581
Alignment:
| Q |
15 |
actacttttttagtgggaccgataggctgatcaacatcattataggtcacttctactcgctcttcaaaagttcttgcatgaatctttttgcacaaagttc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19484327 |
actacttttttagtgggaccgataggctgatcaacatcattataggtcacttctactcgctcttcaaaagttcttgcatgaatctttttgcacaaagttc |
19484426 |
T |
|
| Q |
115 |
tcccacgagtttttctttgagatattcctacaattttataaagtaattaacatgacaaaacaatatcacatgttggttaccaatatataaagaatacatg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19484427 |
tcccacgagtttttctttgagatattcctacaattttataaagtaattaacatgacaaaacaatatcacatgttggttaccaatatataaagaatacatg |
19484526 |
T |
|
| Q |
215 |
aaatcattattatgaaatacaaaactaattaccttgttcttcgtctctatttgtg |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
19484527 |
aaatcattattatgaaatacaaaactaattaccttgttcttcttctctatttgtg |
19484581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 15 - 269
Target Start/End: Original strand, 25476835 - 25477089
Alignment:
| Q |
15 |
actacttttttagtgggaccgataggctgatcaacatcattataggtcacttctactcgctcttcaaaagttcttgcatgaatctttttgcacaaagttc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25476835 |
actacttttttagtgggaccgataggctgatcaacatcattataggtcacttctactcgctcttcaaaagttcttgcatgaatctttttgcacaaagttc |
25476934 |
T |
|
| Q |
115 |
tcccacgagtttttctttgagatattcctacaattttataaagtaattaacatgacaaaacaatatcacatgttggttaccaatatataaagaatacatg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25476935 |
tcccacgagtttttctttgagatattcctacaattttataaagtaattaacatgacaaaacaatatcacatgttggttaccaatatataaagaatacatg |
25477034 |
T |
|
| Q |
215 |
aaatcattattatgaaatacaaaactaattaccttgttcttcgtctctatttgtg |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
25477035 |
aaatcattattatgaaatacaaaactaattaccttgttcttcttctctatttgtg |
25477089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 15 - 269
Target Start/End: Complemental strand, 18450388 - 18450134
Alignment:
| Q |
15 |
actacttttttagtgggaccgataggctgatcaacatcattataggtcacttctactcgctcttcaaaagttcttgcatgaatctttttgcacaaagttc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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|
| T |
18450388 |
actacttttttagtgggaccgataggctgatcaacattattataggtcacttctactcgctcttcaaaagttcttgcataaatctttctgcacaaagttc |
18450289 |
T |
|
| Q |
115 |
tcccacgagtttttctttgagatattcctacaattttataaagtaattaacatgacaaaacaatatcacatgttggttaccaatatataaagaatacatg |
214 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18450288 |
tcccgcgagtttttctttgagatattcctacaattttataaagtaattaacatgacaaaacaatatcacatgttggttaccaatatataaagaatacatg |
18450189 |
T |
|
| Q |
215 |
aaatcattattatgaaatacaaaactaattaccttgttcttcgtctctatttgtg |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
18450188 |
aaatcattattatgaaatacaaaactaattaccttgttcttcttctctatttgtg |
18450134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 21230149 - 21229898
Alignment:
| Q |
18 |
acttttttagtgggaccgataggctgatcaacatcattataggtcacttctactcgctcttcaaaagttcttgcatgaatctttttgcacaaagttctcc |
117 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21230149 |
acttttttagtgggaccggtaggctggtcaacataattataggtcacttctactagctcttcaaaagttcttgcatgaatctttttgcacaaagttctcc |
21230050 |
T |
|
| Q |
118 |
cacgagtttttctttgagatattcctacaattttataaagtaattaacatgacaaaacaatatcacatgttggttaccaatatataaagaatacatgaaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||| |
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|
| T |
21230049 |
cacgagtttttctttgagatattcctacaattttataaagtaattaacatgacaaaaaaatatcacatgttggttactaagatataaagaatacatgaaa |
21229950 |
T |
|
| Q |
218 |
tcattattatgaaatacaaaactaattaccttgttcttcgtctctatttgtg |
269 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
21229949 |
tcattattatgaaatacaaaactaattatcttgttcttcttctctatttgtg |
21229898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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