View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7786_low_16 (Length: 240)
Name: NF7786_low_16
Description: NF7786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7786_low_16 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 1316993 - 1316771
Alignment:
| Q |
18 |
gttgcagtgttcgcaaagcagcaactagaacaaaaagaaagacaaacactcagaatattaacagatcacaataactttcagattcagataagtgatacct |
117 |
Q |
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| T |
1316993 |
gttgcagtgttcgcaaagcagcaactagaacgaaaagaaagacaaacactcagaaaattaacagatcacaataactttcagattcagataagtgatacct |
1316894 |
T |
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| Q |
118 |
gcaaccggaggagctgcttccttcatttccaaagctccacatgctttagatatatcttcaatggcatcactcatgaaatatgtaggcaaaaccatgaact |
217 |
Q |
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| T |
1316893 |
gcaaccggaggagctgcttccttcatttccaaagctgcacatgctttagatatatcttcaatggcatcactcatgaaatatgtaggcaaaaccatgaact |
1316794 |
T |
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| Q |
218 |
actttcatgttgcaataaatact |
240 |
Q |
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||||||||||||||||||||||| |
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| T |
1316793 |
actttcatgttgcaataaatact |
1316771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 43487231 - 43487057
Alignment:
| Q |
18 |
gttgcagtgttcgcaaagcagcaactagaacaaaaagaaagacaaacactcagaatattaacagatcacaataactttcagattcagataagtgatacct |
117 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
43487231 |
gttgcagtgttcgtaaagcagcaactagaacaaaaagaaagacaaacactcagaatattaacagatcacaataactttcagattcagataattgatacct |
43487132 |
T |
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| Q |
118 |
gcaaccggaggagctgcttccttcatttccaaagctccacatgctttagatatatcttcaatggcatcactcatg |
192 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
43487131 |
gcaaccggaggagctgcttccttcatttccaaagctgcacatgctttagatatatcttcaatggcatcactcatg |
43487057 |
T |
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