View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7786_low_3 (Length: 671)
Name: NF7786_low_3
Description: NF7786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7786_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 554; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 21 - 632
Target Start/End: Original strand, 27785153 - 27785768
Alignment:
| Q |
21 |
ttcagcaatgtttttgtccaggtggggcattgctatgcctttggcttatgaaatacaaggcctatattcgaagaagtagcattctatgtactctaatata |
120 |
Q |
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| T |
27785153 |
ttcagcaatgtttttgtccaggtggggcattgctatgcctttggcttatgaaatacaaggcctatattcgaagaagtagcattctatgtactctaaaata |
27785252 |
T |
|
| Q |
121 |
taggatgtatagggaacagttcaaccatccccatgacat-aagccagactgtttgattacataacatgctgatattttctggctccttaatgagcatgat |
219 |
Q |
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| T |
27785253 |
taggatgtatagggaacagttcaaccatccccatgacattaagccagactgtttgattacataacatgctgatattttctggctccttaatgagcatgat |
27785352 |
T |
|
| Q |
220 |
ggttttattgtttcattcaactgcattaatatgacttgtattgtatagcctaagctggaattttccgatagaccttagttcaatttcctttgctctgaaa |
319 |
Q |
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| T |
27785353 |
ggttttattgtttcattcaactgcattaatatgacttgtattgtatagcctaagctggaattttcagatagaccttagttcaatttcctttgctctgaaa |
27785452 |
T |
|
| Q |
320 |
ccatagagcacagatttcagattgcttgaatggcatggtgtgttcatgttatcagttcggggaataccgtgggaatatcattctttttgacaagttaata |
419 |
Q |
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| T |
27785453 |
ccatagagcacaaatttcagattgcttgaatggcatggtgtgttcatgttatcagttcggggaataccatgggaatatcattctttttgacaagttaata |
27785552 |
T |
|
| Q |
420 |
tctttctatcaa---ttgttgcctaccaatttacttagtttttatcttgtccttcatttatcaacaattcactctaattgttcatcctccaacatcaaaa |
516 |
Q |
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| T |
27785553 |
tctttctatcaattgttgttgcttaccaatttacttagtttttattttgtccttcatttgtcaacaattcactctaattgttcatcctccaacatcaaaa |
27785652 |
T |
|
| Q |
517 |
ttgtagattgaacctgcaattacagtatcatcgtctgttaagacgattatgtgttttgttaacaatttgaacgacctaaaattcaatgaccatttatggt |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
27785653 |
ttgtagattgaacctgcaattacagtatcatcgtctgttaagacgattatgtgtttcgttgacaatttcaacgacctaaaattcaatgaccatttatggt |
27785752 |
T |
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| Q |
617 |
aattagcttgtactaa |
632 |
Q |
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| T |
27785753 |
aattagcttgtactaa |
27785768 |
T |
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